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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025391 through 18771 annotations produced 1 hits



Sarcoglycan delta (Scgdelta):

Annotation Number : CG14808
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025391
Gbrowse : chrX:1640423-1648072 (-) // 100.0 //
Probeset : 1633311_at
Accessions : protein= NP_001162639; /// NP_001162640; /// NP_001162641; /// NP_525039;, nucleotide= NM_001169168; /// NM_001169169; /// NM_001169170; /// NM_080300;
Pathway : 0016012 // sarcoglycan complex // inferred from sequence or structural similarity /// 0016012 // sarcoglycan complex //
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008307 // structural constituent of muscle // infe
FlyMine data for FBgn0025391.
Homophila reports that CG14808 is a close match (2e-39) to human gene CMD1L;LGMD2F;SGCD;SGD (NP_758447), a gene associated with Cardiomyopathy, dilated, 1L, 606685 (3);Muscular dystrophy, limb-girdle, type 2F, 601287 (3).
BioGrid reports that CG14808 interacts with CG3161 .
TRiP has 1 RNAi stocks for FBgn0025391 available for purchase.
VDRC has 2 RNAi stocks for FBgn0025391 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 14 of 4 5.80Up
Head12 41 of 4 1.90None
Eye4 20 of 4 0.77None
Thoracicoabdominal ganglion19 23 of 4 3.10Up
Salivary gland8 40 of 4 1.30None
Crop1 00 of 4 0.20None
Midgut4 10 of 4 0.60None
Tubule5 00 of 4 0.90Down
Hindgut9 20 of 4 1.40None
Heart3 00 of 4 0.57None
Fat body2 20 of 4 0.44None
Ovary4 20 of 4 0.70None
Testis2 00 of 4 0.40None
Male accessory glands8 20 of 4 1.40None
Virgin spermatheca5 30 of 4 0.89None
Mated spermatheca5 20 of 4 0.88None
Adult carcass17 40 of 4 2.80None
Larval CNS10 13 of 4 1.56None
Larval Salivary gland5 10 of 4 0.87None
Larval midgut5 10 of 4 0.84None
Larval tubule7 20 of 4 1.20None
Larval hindgut1 00 of 4 0.15None
Larval fat body6 10 of 4 1.00None
Larval trachea3 30 of 4 0.47None
Larval carcass21 42 of 4 3.34Up
S2 cells (growing)2 00 of 4 0.39None
Whole fly6 20 of 4

Looking for FBgn0025391. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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