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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025394 through 18771 annotations produced 2 hits



(CG32810):

Annotation Number : CT34594
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025394
Gbrowse : chrX:1410670-1411134 (+) // 100.0 //
Probeset : 1625211_s_at
Accessions : protein= NP_569926;, nucleotide= NM_130570;
Pathway : 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inf
Interpro : 0005216 // ion channel activity // inferred from sequence or structural similarity /// 0005249 // voltage-gated potassiu
FlyMine data for FBgn0025394.
BDGP gene expression has embryonic in situ data for EG:196F3.2: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0025394 available for purchase.
VDRC has 3 RNAi stocks for FBgn0025394 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain269 64 of 4 1.60Up
Head189 124 of 4 1.10None
Eye241 114 of 4 1.42Up
Thoracicoabdominal ganglion333 44 of 4 2.00Up
Salivary gland172 124 of 4 1.02None
Crop270 74 of 4 1.60Up
Midgut192 124 of 4 1.10None
Tubule145 24 of 4 0.90Down
Hindgut169 104 of 4 1.00None
Heart133 104 of 4 0.79None
Fat body183 34 of 4 1.08None
Ovary207 74 of 4 1.20Up
Testis39 24 of 4 0.20Down
Male accessory glands164 124 of 4 1.00None
Virgin spermatheca150 14 of 4 0.89None
Mated spermatheca160 84 of 4 0.94None
Adult carcass191 34 of 4 1.10None
Larval CNS596 234 of 4 3.51Up
Larval Salivary gland361 94 of 4 2.12Up
Larval midgut186 84 of 4 1.10None
Larval tubule397 64 of 4 2.30Up
Larval hindgut214 94 of 4 1.26Up
Larval fat body272 184 of 4 1.60Up
Larval trachea353 94 of 4 2.08Up
Larval carcass279 114 of 4 1.64Up
S2 cells (growing)389 174 of 4 2.29Up
Whole fly170 114 of 4



(CG32810):

Annotation Number : CG32810
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025394
Gbrowse : chrX:1407091-1411653 (+) // 100.0 //
Probeset : 1629216_at
Accessions : protein= NP_569926;, nucleotide= NM_130570;
Pathway : 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inf
Interpro : 0005216 // ion channel activity // inferred from sequence or structural similarity /// 0005249 // voltage-gated potassiu
FlyMine data for FBgn0025394.
BDGP gene expression has embryonic in situ data for EG:196F3.2: 4 pix of staining in 1 body parts.
BioGrid reports that CG32810 interacts with CG32810 CG7809 CG3937 CG4254 CG6606 CG7001 CG7937 CG8593 CG9025 Dmel CG14425 .
TRiP has 1 RNAi stocks for FBgn0025394 available for purchase.
VDRC has 3 RNAi stocks for FBgn0025394 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 14 of 4 1.30None
Head20 03 of 4 1.40Up
Eye25 44 of 4 1.72None
Thoracicoabdominal ganglion32 34 of 4 2.20Up
Salivary gland48 23 of 4 3.25Up
Crop21 14 of 4 1.50Up
Midgut25 04 of 4 1.70Up
Tubule19 12 of 4 1.30Up
Hindgut24 14 of 4 1.70Up
Heart11 02 of 4 0.79None
Fat body29 71 of 4 1.99Up
Ovary13 04 of 4 0.90None
Testis5 01 of 4 0.30Down
Male accessory glands29 23 of 4 2.00Up
Virgin spermatheca40 24 of 4 2.73Up
Mated spermatheca33 14 of 4 2.26Up
Adult carcass36 33 of 4 2.50Up
Larval CNS37 34 of 4 2.51Up
Larval Salivary gland34 14 of 4 2.31Up
Larval midgut22 42 of 4 1.50None
Larval tubule30 24 of 4 2.00Up
Larval hindgut22 14 of 4 1.50Up
Larval fat body17 32 of 4 1.20None
Larval trachea27 64 of 4 1.85Up
Larval carcass26 14 of 4 1.78Up
S2 cells (growing)22 14 of 4 1.52Up
Whole fly14 10 of 4

Looking for FBgn0025394. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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