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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025456 through 18771 annotations produced 1 hits



cellular repressor of E1A-stimulated genes (CREG):

Annotation Number : CG5413
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025456
Gbrowse : chr3R:13218989-13220305 (-) // 100.0 //
Probeset : 1633592_a_at
Accessions : protein= NP_524385; /// NP_732229; /// NP_732230;, nucleotide= NM_079661; /// NM_169756; /// NM_169757;
Pathway : 0005634 // nucleus // inferred by curator
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0010181 // FMN binding // inferred from electronic
FlyMine data for FBgn0025456.
BioGrid reports that CG5413 interacts with CG8390 .
VDRC has 3 RNAi stocks for FBgn0025456 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 ± 24 of 4 0.20Down
Head255 ± 284 of 4 1.10None
Eye204 ± 234 of 4 0.91None
Thoracicoabdominal ganglion42 ± 24 of 4 0.20Down
Salivary gland156 ± 34 of 4 0.70Down
Crop290 ± 114 of 4 1.30Up
Midgut923 ± 464 of 4 4.10Up
Tubule2146 ± 5364 of 4 9.60Up
Hindgut338 ± 54 of 4 1.50Up
Heart1413 ± 614 of 4 6.30Up
Fat body1225 ± 654 of 4 5.46Up
Ovary130 ± 44 of 4 0.60Down
Testis85 ± 44 of 4 0.40Down
Male accessory glands147 ± 54 of 4 0.70Down
Virgin spermatheca478 ± 204 of 4 2.13Up
Mated spermatheca287 ± 264 of 4 1.28None
Adult carcass683 ± 264 of 4 3.00Up
Larval CNS28 ± 54 of 4 0.13Down
Larval Salivary gland73 ± 44 of 4 0.33Down
Larval midgut2352 ± 4544 of 410.49Up
Larval tubule3828 ± 1554 of 417.10Up
Larval hindgut647 ± 1124 of 4 2.89Up
Larval fat body4780 ± 5554 of 421.30Up
Larval trachea1435 ± 10014 of 4 6.40None
Larval carcass292 ± 954 of 4 1.31None
S2 cells (growing)72 ± 64 of 4 0.32Down
Whole fly224 ± 164 of 4

Looking for FBgn0025456. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime