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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0025463 through 18771 annotations produced 1 hits

brahma associated protein 60 kDa (Bap60):

Annotation Number : CG4303
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025463
Gbrowse : chrX:13051471-13053611 (-) // 100.0 //
Probeset : 1634157_at
Accessions : protein= NP_511143;, nucleotide= NM_078588;
Pathway : DNA-dependent // inferred from direct assay /// 0048666 // neuron development // inferred from mutant phenotype /// 004
Interpro : 0016585 // chromatin remodeling complex // inferred from sequence or structural similarity /// 0035060 // brahma complex
FlyMine data for FBgn0025463.
BDGP gene expression has embryonic in situ data for Bap60: 32 pix of staining in 23 body parts.
BioGrid reports that CG4303 interacts with CG4336 CG4581 CG4634 CG4651 CG4998 CG5242 CG5357 CG6156 CG6838 CG7003 CG7109 CG7212 CG7266 CG7404 CG7518 CG7524 CG7552 CG7716 CG7846 CG8023 CG8057 CG8280 CG8368 CG8470 CG8580 CG8886 CG8907 CG8933 CG9012 CG9025 CG9331 CG9554 CG9586 CG9638 CG18740 .
TRiP has 3 RNAi stocks for FBgn0025463 available for purchase.
VDRC has 3 RNAi stocks for FBgn0025463 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain221 54 of 4 0.90None
Head136 134 of 4 0.50Down
Eye94 84 of 4 0.36Down
Thoracicoabdominal ganglion164 44 of 4 0.60Down
Salivary gland221 84 of 4 0.85None
Crop162 34 of 4 0.60Down
Midgut95 14 of 4 0.40Down
Tubule173 74 of 4 0.70Down
Hindgut184 44 of 4 0.70Down
Heart108 84 of 4 0.42Down
Fat body103 104 of 4 0.40Down
Ovary525 64 of 4 2.00Up
Testis44 34 of 4 0.20Down
Male accessory glands284 154 of 4 1.10None
Virgin spermatheca126 64 of 4 0.48Down
Mated spermatheca124 64 of 4 0.48Down
Adult carcass103 54 of 4 0.40Down
Larval CNS636 324 of 4 2.44Up
Larval Salivary gland350 134 of 4 1.34Up
Larval midgut94 84 of 4 0.36Down
Larval tubule203 14 of 4 0.80None
Larval hindgut190 64 of 4 0.73Down
Larval fat body215 214 of 4 0.80None
Larval trachea298 354 of 4 1.15None
Larval carcass219 124 of 4 0.84None
S2 cells (growing)362 114 of 4 1.39Up
Whole fly260 184 of 4

Looking for FBgn0025463. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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