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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025525 through 18771 annotations produced 1 hits



bric-a-brac (bab2):

Annotation Number : CG9102
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025525
Gbrowse : chr3L:1140448-1177274 (-) // 100.0 //
Probeset : 1624060_at
Accessions : protein= NP_523879;, nucleotide= NM_079155;
Pathway : 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 00057
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author stateme
FlyMine data for FBgn0025525.
TRiP has 1 RNAi stocks for FBgn0025525 available for purchase.
VDRC has 3 RNAi stocks for FBgn0025525 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain325 ± 104 of 4 2.00Up
Head181 ± 44 of 4 1.10None
Eye243 ± 184 of 4 1.52Up
Thoracicoabdominal ganglion353 ± 124 of 4 2.20Up
Salivary gland986 ± 384 of 4 6.15Up
Crop1341 ± 394 of 4 8.40Up
Midgut469 ± 194 of 4 2.90Up
Tubule565 ± 654 of 4 3.50Up
Hindgut649 ± 174 of 4 4.00Up
Heart501 ± 294 of 4 3.13Up
Fat body310 ± 384 of 4 1.93Up
Ovary6 ± 03 of 4 0.00Down
Testis31 ± 14 of 4 0.20Down
Male accessory glands27 ± 24 of 4 0.20Down
Virgin spermatheca77 ± 74 of 4 0.48Down
Mated spermatheca98 ± 84 of 4 0.61Down
Adult carcass295 ± 224 of 4 1.80Up
Larval CNS461 ± 334 of 4 2.88Up
Larval Salivary gland99 ± 74 of 4 0.62Down
Larval midgut298 ± 34 of 4 1.86Up
Larval tubule228 ± 54 of 4 1.40Up
Larval hindgut274 ± 234 of 4 1.71Up
Larval fat body87 ± 104 of 4 0.50Down
Larval trachea49 ± 104 of 4 0.31Down
Larval carcass199 ± 454 of 4 1.25None
S2 cells (growing)23 ± 34 of 4 0.15Down
Whole fly160 ± 94 of 4

Looking for FBgn0025525. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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