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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025549 through 18771 annotations produced 1 hits



unc-119 (unc-119):

Annotation Number : CG1659
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025549
Gbrowse : chrX:7182712-7185337 (-) // 100.0 //
Probeset : 1628148_at
Accessions : protein= NP_572389;, nucleotide= NM_132161;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0025549.
BDGP gene expression has embryonic in situ data for unc-119: 4 pix of staining in 1 body parts.
BioGrid reports that CG1659 interacts with CG7840 CG31637 CG32264 CG6192 CG8674 CG8893 CG32179 .
VDRC has 2 RNAi stocks for FBgn0025549 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain579 ± 164 of 4 3.00Up
Head171 ± 124 of 4 0.90None
Eye132 ± 74 of 4 0.68Down
Thoracicoabdominal ganglion630 ± 344 of 4 3.30Up
Salivary gland79 ± 84 of 4 0.41Down
Crop72 ± 34 of 4 0.40Down
Midgut86 ± 14 of 4 0.40Down
Tubule64 ± 14 of 4 0.30Down
Hindgut60 ± 24 of 4 0.30Down
Heart73 ± 14 of 4 0.38Down
Fat body74 ± 64 of 4 0.38Down
Ovary453 ± 124 of 4 2.30Up
Testis186 ± 84 of 4 1.00None
Male accessory glands237 ± 64 of 4 1.20Up
Virgin spermatheca74 ± 24 of 4 0.39Down
Mated spermatheca84 ± 34 of 4 0.43Down
Adult carcass75 ± 74 of 4 0.40Down
Larval CNS390 ± 84 of 4 2.02Up
Larval Salivary gland101 ± 54 of 4 0.52Down
Larval midgut81 ± 04 of 4 0.42Down
Larval tubule152 ± 24 of 4 0.80Down
Larval hindgut54 ± 24 of 4 0.28Down
Larval fat body132 ± 124 of 4 0.70Down
Larval trachea83 ± 94 of 4 0.43Down
Larval carcass54 ± 54 of 4 0.28Down
S2 cells (growing)141 ± 24 of 4 0.73Down
Whole fly193 ± 104 of 4

Looking for FBgn0025549. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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