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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025573 through 18771 annotations produced 2 hits



Protein phosphatase N at 58A (PpN58A):

Annotation Number : CG3245
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025573
Gbrowse : chr2R:17768856-17770388 (-) // 100.0 //
Probeset : 1633578_a_at
Accessions : protein= NP_477384;, nucleotide= NM_058036;
Pathway : 0005634 // nucleus // inferred from direct assay
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/thre
FlyMine data for FBgn0025573.
VDRC has 2 RNAi stocks for FBgn0025573 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 03 of 4 0.20Down
Head6 01 of 4 0.20Down
Eye2 00 of 4 0.08Down
Thoracicoabdominal ganglion7 11 of 4 0.20Down
Salivary gland13 00 of 4 0.41Down
Crop9 12 of 4 0.30Down
Midgut7 21 of 4 0.20Down
Tubule6 01 of 4 0.20Down
Hindgut7 02 of 4 0.20Down
Heart4 01 of 4 0.14Down
Fat body9 12 of 4 0.29Down
Ovary3 00 of 4 0.10Down
Testis339 164 of 410.50Up
Male accessory glands14 32 of 4 0.40Down
Virgin spermatheca9 04 of 4 0.29Down
Mated spermatheca9 12 of 4 0.30Down
Adult carcass11 10 of 4 0.30Down
Larval CNS4 12 of 4 0.15Down
Larval Salivary gland6 10 of 4 0.19Down
Larval midgut6 00 of 4 0.20Down
Larval tubule8 01 of 4 0.30Down
Larval hindgut7 01 of 4 0.22Down
Larval fat body51 194 of 4 1.60None
Larval trachea4 22 of 4 0.12Down
Larval carcass8 13 of 4 0.27Down
S2 cells (growing)5 00 of 4 0.18Down
Whole fly32 24 of 4



Protein phosphatase N at 58A (PpN58A):

Annotation Number : CG3245
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025573
Gbrowse : chr2R:17766783-17770388 (-) // 100.0 //
Probeset : 1624327_at
Accessions : protein= NP_477384;, nucleotide= NM_058036;
Pathway : 0005634 // nucleus // inferred from direct assay
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/thre
FlyMine data for FBgn0025573.
VDRC has 2 RNAi stocks for FBgn0025573 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.90None
Head1 00 of 4 2.00None
Eye1 00 of 4 1.91None
Thoracicoabdominal ganglion0 00 of 4 1.20None
Salivary gland5 10 of 4 9.30None
Crop2 10 of 4 3.50None
Midgut2 10 of 4 4.70None
Tubule1 00 of 4 3.30Up
Hindgut2 10 of 4 3.70None
Heart0 00 of 4 0.74None
Fat body9 20 of 416.00Up
Ovary0 00 of 4 0.80None
Testis1 00 of 4 2.90None
Male accessory glands1 00 of 4 3.00None
Virgin spermatheca7 21 of 412.09None
Mated spermatheca5 21 of 410.13None
Adult carcass3 20 of 4 6.30None
Larval CNS5 10 of 4 9.57Up
Larval Salivary gland2 00 of 4 5.09None
Larval midgut3 10 of 4 5.30None
Larval tubule2 00 of 4 3.50None
Larval hindgut2 00 of 4 3.70None
Larval fat body1 00 of 4 2.50None
Larval trachea1 10 of 4 2.52None
Larval carcass2 10 of 4 4.09None
S2 cells (growing)1 00 of 4 2.04None
Whole fly0 00 of 4

Looking for FBgn0025573. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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