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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025608 through 18771 annotations produced 1 hits



Fly Fas-associated factor (Faf):

Annotation Number : CG10372
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025608
Gbrowse : chr2L:18706260-18708688 (-) // 100.0 //
Probeset : 1641459_at
Accessions : protein= NP_477388;, nucleotide= NM_058040;
FlyMine data for FBgn0025608.
BioGrid reports that CG10372 interacts with CG8942 .
VDRC has 3 RNAi stocks for FBgn0025608 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain420 ± 64 of 4 1.40Up
Head320 ± 54 of 4 1.10None
Eye370 ± 84 of 4 1.24Up
Thoracicoabdominal ganglion304 ± 64 of 4 1.00None
Salivary gland379 ± 244 of 4 1.27Up
Crop498 ± 284 of 4 1.70Up
Midgut301 ± 94 of 4 1.00None
Tubule406 ± 124 of 4 1.40Up
Hindgut424 ± 34 of 4 1.40Up
Heart310 ± 104 of 4 1.04None
Fat body410 ± 434 of 4 1.37Up
Ovary425 ± 114 of 4 1.40Up
Testis381 ± 114 of 4 1.30Up
Male accessory glands476 ± 24 of 4 1.60Up
Virgin spermatheca426 ± 144 of 4 1.43Up
Mated spermatheca399 ± 244 of 4 1.34Up
Adult carcass327 ± 94 of 4 1.10None
Larval CNS256 ± 124 of 4 0.86None
Larval Salivary gland264 ± 144 of 4 0.88None
Larval midgut373 ± 184 of 4 1.25Up
Larval tubule490 ± 124 of 4 1.60Up
Larval hindgut373 ± 114 of 4 1.25Up
Larval fat body437 ± 204 of 4 1.50Up
Larval trachea220 ± 124 of 4 0.74Down
Larval carcass378 ± 74 of 4 1.27Up
S2 cells (growing)323 ± 14 of 4 1.08None
Whole fly298 ± 164 of 4

Looking for FBgn0025608. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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