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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025612 through 18771 annotations produced 1 hits



(CG3062):

Annotation Number : CG3062
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025612
Gbrowse : chrX:4535299-4538901 (-) // 100.0 //
Probeset : 1638443_at
Accessions : protein= NP_572177;, nucleotide= NM_131949;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0025612.
BioGrid reports that CG3062 interacts with CG4394 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head2 00 of 4 0.10Down
Eye1 00 of 4 0.06Down
Thoracicoabdominal ganglion1 10 of 4 0.10Down
Salivary gland5 20 of 4 0.27Down
Crop2 10 of 4 0.10Down
Midgut3 20 of 4 0.20Down
Tubule1 00 of 4 0.10Down
Hindgut2 10 of 4 0.10Down
Heart1 00 of 4 0.08Down
Fat body2 20 of 4 0.11Down
Ovary0 00 of 4 0.00Down
Testis223 84 of 410.00Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.07Down
Mated spermatheca1 00 of 4 0.08Down
Adult carcass3 00 of 4 0.10Down
Larval CNS1 00 of 4 0.04Down
Larval Salivary gland1 00 of 4 0.06Down
Larval midgut2 00 of 4 0.10Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut2 00 of 4 0.09Down
Larval fat body25 91 of 4 1.20None
Larval trachea0 00 of 4 0.03Down
Larval carcass1 00 of 4 0.08Down
S2 cells (growing)1 00 of 4 0.05Down
Whole fly22 24 of 4

Looking for FBgn0025612. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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