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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0025613 through 18771 annotations produced 1 hits


Annotation Number : CG3081
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025613
Gbrowse : chrX:4533357-4535109 (-) // 100.0 //
Probeset : 1624739_at
Accessions : protein= NP_572176;, nucleotide= NM_131948;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0025613.
BioGrid reports that CG3081 interacts with CG8344 CG3081 CG33193 CG3533 CG14464 CG4216 CG4276 CG4394 CG5163 CG5701 CG5930 CG6134 CG6607 CG6667 CG7017 CG7238 CG7954 CG8079 CG8854 CG8942 CG9036 CG9173 CG9277 CG9398 CG9911 CG9949 .
VDRC has 3 RNAi stocks for FBgn0025613 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.80None
Head3 20 of 4 0.80None
Eye4 11 of 4 0.86None
Thoracicoabdominal ganglion6 12 of 4 1.50None
Salivary gland14 31 of 4 3.13None
Crop5 00 of 4 1.10None
Midgut7 00 of 4 1.50None
Tubule5 00 of 4 1.20Up
Hindgut6 12 of 4 1.30None
Heart1 00 of 4 0.29None
Fat body7 20 of 4 1.48None
Ovary2 00 of 4 0.40None
Testis3 00 of 4 0.80None
Male accessory glands9 20 of 4 2.00None
Virgin spermatheca8 20 of 4 1.71None
Mated spermatheca4 10 of 4 0.98None
Adult carcass1 00 of 4 0.40None
Larval CNS2 21 of 4 0.56None
Larval Salivary gland1 00 of 4 0.36None
Larval midgut7 12 of 4 1.67None
Larval tubule3 10 of 4 0.80None
Larval hindgut4 10 of 4 0.96None
Larval fat body4 10 of 4 0.90None
Larval trachea3 10 of 4 0.66None
Larval carcass2 00 of 4 0.50None
S2 cells (growing)3 10 of 4 0.66None
Whole fly4 10 of 4

Looking for FBgn0025613. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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