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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025621 through 18771 annotations produced 1 hits



(CG16989):

Annotation Number : CG16989
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025621
Gbrowse : chrX:687200-690404 (+) // 100.0 //
Probeset : 1634854_at
Accessions : protein= NP_569860;, nucleotide= NM_130504;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0025621.
BDGP gene expression has embryonic in situ data for EG:34F3.4: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0025621 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 ± 14 of 4 0.90None
Head79 ± 44 of 4 1.10None
Eye76 ± 64 of 4 1.07None
Thoracicoabdominal ganglion53 ± 24 of 4 0.70None
Salivary gland194 ± 124 of 4 2.71Up
Crop111 ± 54 of 4 1.60Up
Midgut99 ± 34 of 4 1.40Up
Tubule113 ± 74 of 4 1.60Up
Hindgut115 ± 24 of 4 1.60Up
Heart78 ± 44 of 4 1.10None
Fat body106 ± 124 of 4 1.48Up
Ovary89 ± 14 of 4 1.20None
Testis39 ± 34 of 4 0.50Down
Male accessory glands244 ± 244 of 4 3.40Up
Virgin spermatheca74 ± 34 of 4 1.03None
Mated spermatheca70 ± 34 of 4 0.98None
Adult carcass105 ± 64 of 4 1.50Up
Larval CNS77 ± 54 of 4 1.07None
Larval Salivary gland130 ± 84 of 4 1.82Up
Larval midgut89 ± 44 of 4 1.25None
Larval tubule90 ± 44 of 4 1.30None
Larval hindgut131 ± 134 of 4 1.83Up
Larval fat body88 ± 54 of 4 1.20None
Larval trachea116 ± 174 of 4 1.62Up
Larval carcass108 ± 64 of 4 1.51Up
S2 cells (growing)68 ± 64 of 4 0.96None
Whole fly71 ± 94 of 4

Looking for FBgn0025621. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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