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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025629 through 18771 annotations produced 1 hits



(CG4045):

Annotation Number : CG4045
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025629
Gbrowse : chrX:1968830-1969897 (-) // 100.0 //
Probeset : 1632089_at
Accessions : protein= NP_569978;, nucleotide= NM_130622;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0000049 // tRNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic an
FlyMine data for FBgn0025629.
BioGrid reports that CG4045 interacts with CG5063 .
VDRC has 2 RNAi stocks for FBgn0025629 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain105 24 of 4 0.80None
Head80 84 of 4 0.60Down
Eye94 34 of 4 0.73Down
Thoracicoabdominal ganglion81 24 of 4 0.60Down
Salivary gland99 64 of 4 0.77None
Crop95 14 of 4 0.70Down
Midgut124 54 of 4 1.00None
Tubule77 34 of 4 0.60Down
Hindgut87 44 of 4 0.70Down
Heart84 54 of 4 0.65Down
Fat body97 104 of 4 0.75Down
Ovary219 64 of 4 1.70Up
Testis27 14 of 4 0.20Down
Male accessory glands171 74 of 4 1.30Up
Virgin spermatheca99 64 of 4 0.76Down
Mated spermatheca109 44 of 4 0.84None
Adult carcass80 14 of 4 0.60Down
Larval CNS212 254 of 4 1.63Up
Larval Salivary gland196 54 of 4 1.51Up
Larval midgut64 34 of 4 0.50Down
Larval tubule44 24 of 4 0.30Down
Larval hindgut103 54 of 4 0.80None
Larval fat body51 34 of 4 0.40Down
Larval trachea253 254 of 4 1.94Up
Larval carcass150 224 of 4 1.15None
S2 cells (growing)353 84 of 4 2.71Up
Whole fly130 104 of 4

Looking for FBgn0025629. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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