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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025630 through 18771 annotations produced 1 hits



(CG4061):

Annotation Number : CG4061
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025630
Gbrowse : chrX:1966445-1968923 (+) // 99.81 //
Probeset : 1628201_at
Accessions : protein= NP_569977;, nucleotide= NM_130621;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0025630.
BDGP gene expression has embryonic in situ data for EG:22E5.3: 21 pix of staining in 1 body parts.
BioGrid reports that CG4061 interacts with CG4853 .
VDRC has 1 RNAi stocks for FBgn0025630 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain98 ± 54 of 4 1.20None
Head35 ± 04 of 4 0.40Down
Eye33 ± 24 of 4 0.40Down
Thoracicoabdominal ganglion79 ± 34 of 4 1.00None
Salivary gland36 ± 34 of 4 0.44Down
Crop27 ± 14 of 4 0.30Down
Midgut29 ± 24 of 4 0.40Down
Tubule38 ± 34 of 4 0.50Down
Hindgut23 ± 14 of 4 0.30Down
Heart24 ± 04 of 4 0.30Down
Fat body24 ± 74 of 4 0.29Down
Ovary133 ± 44 of 4 1.60Up
Testis71 ± 24 of 4 0.90Down
Male accessory glands52 ± 14 of 4 0.60Down
Virgin spermatheca24 ± 14 of 4 0.30Down
Mated spermatheca27 ± 14 of 4 0.33Down
Adult carcass27 ± 44 of 4 0.30Down
Larval CNS116 ± 44 of 4 1.42Up
Larval Salivary gland44 ± 44 of 4 0.54Down
Larval midgut21 ± 24 of 4 0.26Down
Larval tubule39 ± 34 of 4 0.50Down
Larval hindgut33 ± 14 of 4 0.40Down
Larval fat body29 ± 44 of 4 0.40Down
Larval trachea53 ± 84 of 4 0.65Down
Larval carcass33 ± 14 of 4 0.41Down
S2 cells (growing)103 ± 34 of 4 1.26Up
Whole fly82 ± 34 of 4

Looking for FBgn0025630. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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