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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025632 through 18771 annotations produced 1 hits



(CG4313):

Annotation Number : CG4313
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025632
Gbrowse : chrX:1946649-1949447 (+) // 100.0 //
Probeset : 1635767_at
Accessions : protein= NP_001033824; /// NP_569971;, nucleotide= NM_001038735; /// NM_130615;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inf
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0025632.
BDGP gene expression has embryonic in situ data for EG:22E5.10: 18 pix of staining in 3 body parts.
Homophila reports that CG4313 is a close match (7e-12) to human gene HTR2A (NP_000612), a gene associated with {Alcohol dependence, susceptibility to}, 103780 (3);{Anorexia nervosa, susceptibility to}, 606788 (3);{Major depressive disorder, response to citalopram therapy in}, 608516 (3);{Obsessive-compulsive disorder, susceptibility to}, 164230 (3);{Schizophrenia, susceptibility to}, 181500 (3);{Seasonal affective disorder, susceptibility to}, 608516 (3).
TRiP has 1 RNAi stocks for FBgn0025632 available for purchase.
VDRC has 1 RNAi stocks for FBgn0025632 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain65 ± 24 of 4 4.40Up
Head23 ± 04 of 4 1.60None
Eye15 ± 13 of 4 1.01None
Thoracicoabdominal ganglion54 ± 24 of 4 3.70Up
Salivary gland13 ± 40 of 4 0.90None
Crop55 ± 44 of 4 3.70Up
Midgut22 ± 40 of 4 1.50None
Tubule13 ± 01 of 4 0.90Down
Hindgut43 ± 14 of 4 2.90Up
Heart7 ± 01 of 4 0.49None
Fat body13 ± 40 of 4 0.91None
Ovary20 ± 24 of 4 1.40None
Testis9 ± 12 of 4 0.70None
Male accessory glands23 ± 13 of 4 1.60None
Virgin spermatheca5 ± 10 of 4 0.37None
Mated spermatheca10 ± 10 of 4 0.72None
Adult carcass11 ± 30 of 4 0.80None
Larval CNS26 ± 24 of 4 1.80Up
Larval Salivary gland9 ± 21 of 4 0.60None
Larval midgut25 ± 30 of 4 1.73None
Larval tubule11 ± 31 of 4 0.80None
Larval hindgut29 ± 24 of 4 2.00Up
Larval fat body5 ± 10 of 4 0.30None
Larval trachea5 ± 30 of 4 0.40None
Larval carcass9 ± 10 of 4 0.66None
S2 cells (growing)7 ± 10 of 4 0.51None
Whole fly14 ± 32 of 4

Looking for FBgn0025632. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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