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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0025633 through 18771 annotations produced 1 hits


Annotation Number : CG13366
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025633
Gbrowse : chrX:504578-514228 (-) // 100.0 //
Probeset : 1637148_at
Accessions : protein= NP_001036254; /// NP_569848;, nucleotide= NM_001042789; /// NM_130492;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0025633.
Homophila reports that CG13366 is a close match (4e-14) to human gene SCA5;SPTBN2 (NP_008877), a gene associated with Spinocerebellar ataxia-5, 600224 (3).
BioGrid reports that CG13366 interacts with CG9014 CG8301 .
TRiP has 1 RNAi stocks for FBgn0025633 available for purchase.
VDRC has 2 RNAi stocks for FBgn0025633 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain157 14 of 4 0.80None
Head114 64 of 4 0.60Down
Eye310 134 of 4 1.54Up
Thoracicoabdominal ganglion130 64 of 4 0.60Down
Salivary gland141 44 of 4 0.70Down
Crop94 24 of 4 0.50Down
Midgut138 54 of 4 0.70Down
Tubule468 214 of 4 2.30Up
Hindgut124 34 of 4 0.60Down
Heart48 14 of 4 0.24Down
Fat body42 74 of 4 0.21Down
Ovary553 24 of 4 2.70Up
Testis14 04 of 4 0.10Down
Male accessory glands101 34 of 4 0.50Down
Virgin spermatheca47 14 of 4 0.23Down
Mated spermatheca50 44 of 4 0.25Down
Adult carcass73 84 of 4 0.40Down
Larval CNS284 104 of 4 1.41Up
Larval Salivary gland279 114 of 4 1.39Up
Larval midgut150 64 of 4 0.75None
Larval tubule281 64 of 4 1.40Up
Larval hindgut157 54 of 4 0.78None
Larval fat body160 94 of 4 0.80None
Larval trachea158 64 of 4 0.79None
Larval carcass156 184 of 4 0.77None
S2 cells (growing)223 44 of 4 1.11None
Whole fly202 184 of 4

Looking for FBgn0025633. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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