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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0025635 through 18771 annotations produced 1 hits


Annotation Number : CG17829
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025635
Gbrowse : chrX:519587-522055 (+) // 99.82 //
Probeset : 1628960_s_at
Accessions : protein= NP_652054; /// NP_726684; /// NP_726685;, nucleotide= NM_143797; /// NM_166851; /// NM_166852;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0025635.
BDGP gene expression has embryonic in situ data for EG:115C2.6: 9 pix of staining in 4 body parts.
Homophila reports that CG17829 is a close match (5e-11) to human gene MRX89;ZNF41 (NP_700359), a gene associated with Mental retardation, X-linked-89 (3).
BioGrid reports that CG17829 interacts with CG7101 CG7417 CG8301 CG2045 CG2120 CG2865 CG3724 CG5930 CG7533 CG7619 CG9653 Dmel CG14425 .
TRiP has 1 RNAi stocks for FBgn0025635 available for purchase.
VDRC has 2 RNAi stocks for FBgn0025635 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain102 34 of 4 0.60Down
Head58 24 of 4 0.30Down
Eye46 24 of 4 0.27Down
Thoracicoabdominal ganglion101 14 of 4 0.60Down
Salivary gland85 114 of 4 0.49Down
Crop68 14 of 4 0.40Down
Midgut76 14 of 4 0.40Down
Tubule75 24 of 4 0.40Down
Hindgut54 14 of 4 0.30Down
Heart38 14 of 4 0.23Down
Fat body92 44 of 4 0.54Down
Ovary452 44 of 4 2.60Up
Testis24 04 of 4 0.10Down
Male accessory glands187 114 of 4 1.10None
Virgin spermatheca74 24 of 4 0.43Down
Mated spermatheca85 24 of 4 0.49Down
Adult carcass65 54 of 4 0.40Down
Larval CNS188 74 of 4 1.09Up
Larval Salivary gland150 64 of 4 0.88Down
Larval midgut72 34 of 4 0.42Down
Larval tubule84 54 of 4 0.50Down
Larval hindgut85 14 of 4 0.49Down
Larval fat body86 54 of 4 0.50Down
Larval trachea75 44 of 4 0.44Down
Larval carcass88 34 of 4 0.51Down
S2 cells (growing)85 04 of 4 0.50Down
Whole fly172 34 of 4

Looking for FBgn0025635. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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