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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025637 through 18771 annotations produced 1 hits



skpA (skpA):

Annotation Number : CG16983
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025637
Gbrowse : chrX:550104-551937 (+) // 100.0 //
Probeset : 1625801_s_at
Accessions : protein= NP_001033818; /// NP_477390; /// NP_726690; /// NP_726691; /// NP_726692; /// NP_726693; /// NP_726694; /// NP_726695;, nucleotide= NM_001038729; /// NM_058042; /// NM_166856; /// NM_166857; /// NM_166858; /// NM_166859; /// NM_166860; /// NM_166861;
Pathway : 0005813 // centrosome // inferred from direct assay /// 0005819 // spindle // inferred from direct assay /// 0005875 //
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0025637.
BDGP gene expression has embryonic in situ data for skpA: 8 pix of staining in 1 body parts.
BioGrid reports that CG16983 interacts with CG2247 CG4643 CG9316 CG9660 CG9772 CG9952 CG3412 CG4911 CG5327 CG7148 CG32042 CG1871 CG4643 CG10855 CG3640 CG10805 CG18745 CG11963 CG9882 CG14937 CG14317 CG1034 CG4911 CG7148 CG31646 CG9772 CG18273 CG2010 CG3412 CG9952 CG9316 CG9984 CG12432 CG8272 CG13213 CG4221 CG11486 CG3193 CG33553 CG6758 CG5003 CG4496 CG1244 CG9461 CG15010 CG7922 CG13085 CG10395 .
TRiP has 3 RNAi stocks for FBgn0025637 available for purchase.
VDRC has 5 RNAi stocks for FBgn0025637 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1266 224 of 4 1.20None
Head1040 654 of 4 1.00None
Eye1803 504 of 4 1.71Up
Thoracicoabdominal ganglion1212 244 of 4 1.10None
Salivary gland1407 474 of 4 1.33Up
Crop1517 414 of 4 1.40Up
Midgut1193 274 of 4 1.10None
Tubule1618 964 of 4 1.50Up
Hindgut1454 154 of 4 1.40Up
Heart1292 214 of 4 1.22None
Fat body1257 664 of 4 1.19None
Ovary1273 224 of 4 1.20None
Testis207 44 of 4 0.20Down
Male accessory glands1022 154 of 4 1.00None
Virgin spermatheca1144 14 of 4 1.08None
Mated spermatheca1068 404 of 4 1.01None
Adult carcass829 294 of 4 0.80None
Larval CNS1603 1124 of 4 1.52Up
Larval Salivary gland1966 344 of 4 1.86Up
Larval midgut1358 344 of 4 1.29Up
Larval tubule1717 154 of 4 1.60Up
Larval hindgut1636 574 of 4 1.55Up
Larval fat body1132 1234 of 4 1.10None
Larval trachea1627 834 of 4 1.54Up
Larval carcass1522 204 of 4 1.44Up
S2 cells (growing)1852 114 of 4 1.75Up
Whole fly1057 814 of 4

Looking for FBgn0025637. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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