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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025642 through 18771 annotations produced 1 hits



(CG32812):

Annotation Number : CG32812
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025642
Gbrowse : chrX:1182078-1182756 (+) // 100.0 //
Probeset : 1629947_at
Accessions : protein= NP_569899;, nucleotide= NM_130543;
Pathway : 0005955 // calcineurin complex // inferred from sequence or structural similarity
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004723 // calcium-dependent p
FlyMine data for FBgn0025642.
VDRC has 6 RNAi stocks for FBgn0025642 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.40None
Head1 ± 10 of 4 0.20Down
Eye3 ± 10 of 4 0.40None
Thoracicoabdominal ganglion4 ± 00 of 4 0.50None
Salivary gland2 ± 00 of 4 0.21Down
Crop2 ± 10 of 4 0.20Down
Midgut2 ± 10 of 4 0.30Down
Tubule1 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.30Down
Heart1 ± 00 of 4 0.16Down
Fat body3 ± 30 of 4 0.40None
Ovary2 ± 00 of 4 0.30Down
Testis132 ± 44 of 414.00Up
Male accessory glands6 ± 20 of 4 0.70None
Virgin spermatheca2 ± 10 of 4 0.29None
Mated spermatheca1 ± 00 of 4 0.13Down
Adult carcass1 ± 00 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.20Down
Larval Salivary gland2 ± 00 of 4 0.24Down
Larval midgut4 ± 10 of 4 0.43None
Larval tubule0 ± 00 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.08Down
Larval fat body11 ± 81 of 4 1.20None
Larval trachea2 ± 10 of 4 0.25Down
Larval carcass2 ± 10 of 4 0.25Down
S2 cells (growing)46 ± 34 of 4 4.92Up
Whole fly9 ± 23 of 4

Looking for FBgn0025642. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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