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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025643 through 18771 annotations produced 2 hits



(CG3588):

Annotation Number : CG3588
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025643
Gbrowse : chrX:2814153-2818416 (+) // 100.0 //
Probeset : 1627644_a_at
Accessions : protein= NP_001027039; /// NP_570036; /// NP_726833; /// NP_726834;, nucleotide= NM_001031868; /// NM_130680; /// NM_166955; /// NM_166956;
FlyMine data for FBgn0025643.
BDGP gene expression has embryonic in situ data for EG:100G7.6: 20 pix of staining in 5 body parts.
VDRC has 2 RNAi stocks for FBgn0025643 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.50None
Head21 44 of 4 3.20Up
Eye3 10 of 4 0.54None
Thoracicoabdominal ganglion3 00 of 4 0.50None
Salivary gland10 30 of 4 1.48None
Crop15 14 of 4 2.30Up
Midgut9 10 of 4 1.40None
Tubule13 11 of 4 1.90Up
Hindgut16 14 of 4 2.30Up
Heart7 10 of 4 1.07None
Fat body8 50 of 4 1.28None
Ovary5 10 of 4 0.80None
Testis1 00 of 4 0.20None
Male accessory glands11 30 of 4 1.70None
Virgin spermatheca8 10 of 4 1.25None
Mated spermatheca6 20 of 4 0.91None
Adult carcass16 22 of 4 2.40Up
Larval CNS4 30 of 4 0.59None
Larval Salivary gland4 10 of 4 0.65None
Larval midgut5 10 of 4 0.86None
Larval tubule8 20 of 4 1.20None
Larval hindgut30 24 of 4 4.47Up
Larval fat body19 12 of 4 2.80Up
Larval trachea8 41 of 4 1.18None
Larval carcass34 34 of 4 5.06Up
S2 cells (growing)8 10 of 4 1.18None
Whole fly6 20 of 4



(CG3588):

Annotation Number : CG3588
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025643
Gbrowse : chrX:2813802-2817501 (+) // 100.0 //
Probeset : 1630288_a_at
Accessions : protein= NP_001027039; /// NP_570036; /// NP_726833; /// NP_726834;, nucleotide= NM_001031868; /// NM_130680; /// NM_166955; /// NM_166956;
FlyMine data for FBgn0025643.
BDGP gene expression has embryonic in situ data for EG:100G7.6: 20 pix of staining in 5 body parts.
VDRC has 2 RNAi stocks for FBgn0025643 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 11 of 4 0.20Down
Head180 194 of 4 6.40Up
Eye1 00 of 4 0.05Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland8 20 of 4 0.28Down
Crop74 74 of 4 2.60Up
Midgut1 00 of 4 0.10Down
Tubule10 31 of 4 0.40Down
Hindgut76 24 of 4 2.70Up
Heart0 00 of 4 0.03Down
Fat body3 30 of 4 0.13Down
Ovary0 00 of 4 0.00Down
Testis5 10 of 4 0.20Down
Male accessory glands4 20 of 4 0.20Down
Virgin spermatheca2 10 of 4 0.07Down
Mated spermatheca1 00 of 4 0.06Down
Adult carcass27 80 of 4 1.00None
Larval CNS2 00 of 4 0.08Down
Larval Salivary gland4 00 of 4 0.16Down
Larval midgut12 10 of 4 0.42Down
Larval tubule18 23 of 4 0.60None
Larval hindgut769 284 of 427.12Up
Larval fat body6 20 of 4 0.20Down
Larval trachea227 454 of 4 8.02Up
Larval carcass1620 1234 of 457.12Up
S2 cells (growing)2 00 of 4 0.09Down
Whole fly28 44 of 4

Looking for FBgn0025643. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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