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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025644 through 18771 annotations produced 1 hits



(CG14424):

Annotation Number : CG14424
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025644
Gbrowse : chrX:2820081-2821202 (-) // 100.0 //
Probeset : 1633408_at
Accessions : protein= NP_570037;, nucleotide= NM_130681;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0025644.
VDRC has 1 RNAi stocks for FBgn0025644 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.60None
Head2 ± 00 of 4 0.60None
Eye1 ± 00 of 4 0.25None
Thoracicoabdominal ganglion3 ± 00 of 4 0.80None
Salivary gland10 ± 70 of 4 2.52None
Crop5 ± 10 of 4 1.50None
Midgut2 ± 00 of 4 0.70None
Tubule8 ± 10 of 4 2.00Up
Hindgut2 ± 00 of 4 0.50None
Heart4 ± 00 of 4 1.07None
Fat body7 ± 40 of 4 1.93None
Ovary2 ± 10 of 4 0.60None
Testis2 ± 10 of 4 0.60None
Male accessory glands4 ± 20 of 4 1.20None
Virgin spermatheca6 ± 20 of 4 1.67None
Mated spermatheca7 ± 30 of 4 1.80None
Adult carcass2 ± 00 of 4 0.70None
Larval CNS4 ± 20 of 4 1.08None
Larval Salivary gland2 ± 00 of 4 0.58None
Larval midgut12 ± 10 of 4 3.04Up
Larval tubule8 ± 10 of 4 2.10None
Larval hindgut6 ± 00 of 4 1.69None
Larval fat body2 ± 00 of 4 0.70None
Larval trachea2 ± 30 of 4 0.75None
Larval carcass17 ± 10 of 4 4.36Up
S2 cells (growing)1 ± 00 of 4 0.29None
Whole fly4 ± 10 of 4

Looking for FBgn0025644. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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