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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025645 through 18771 annotations produced 1 hits



(CG3598):

Annotation Number : CG3598
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025645
Gbrowse : chrX:2831160-2831979 (+) // 100.0 //
Probeset : 1630442_at
Accessions : protein= NP_570040;, nucleotide= NM_130684;
FlyMine data for FBgn0025645.
BioGrid reports that CG3598 interacts with CG6459 .
VDRC has 3 RNAi stocks for FBgn0025645 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.40None
Head0 ± 00 of 4 1.00None
Eye1 ± 10 of 4 1.78None
Thoracicoabdominal ganglion0 ± 00 of 4 0.70None
Salivary gland9 ± 30 of 410.31None
Crop0 ± 00 of 4 0.90None
Midgut1 ± 00 of 4 1.40None
Tubule1 ± 00 of 4 2.00Up
Hindgut0 ± 00 of 4 0.90None
Heart2 ± 00 of 4 2.47None
Fat body1 ± 10 of 4 1.64None
Ovary1 ± 00 of 4 1.90None
Testis6 ± 10 of 4 6.60None
Male accessory glands5 ± 30 of 4 5.60None
Virgin spermatheca1 ± 00 of 4 1.39None
Mated spermatheca0 ± 00 of 4 0.67None
Adult carcass1 ± 00 of 4 1.90None
Larval CNS2 ± 20 of 4 2.28None
Larval Salivary gland2 ± 10 of 4 3.06None
Larval midgut1 ± 00 of 4 1.50None
Larval tubule0 ± 00 of 4 0.70None
Larval hindgut1 ± 00 of 4 1.25None
Larval fat body2 ± 10 of 4 3.10None
Larval trachea4 ± 21 of 4 4.94None
Larval carcass1 ± 00 of 4 1.86None
S2 cells (growing)0 ± 00 of 4 0.75None
Whole fly0 ± 00 of 4

Looking for FBgn0025645. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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