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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025674 through 18771 annotations produced 1 hits



chr2L:22128263-22130142 (-) // 99.68 // (cyclin K):

Annotation Number : CG15218
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1634262_s_at
Accessions : protein= , nucleotide= NP_788082; /// NP_788083;
FlyMine data for full length.
Homophila reports that CG15218 is a close match (4e-19) to human gene FAM58A;STAR (NP_689487), a gene associated with STAR syndrome, 300707 (3).
BioGrid reports that CG15218 interacts with CG2258 CG3966 CG8776 CG15422 CG17050 CG17484 CG17777 CG2023 CG2957 CG3027 CG32156 CG3895 CG17678 CG4385 CG4533 CG4700 CG5840 CG6050 CG6175 CG6425 CG8207 CG8705 CG8924 CG5363 CG17508 CG5708 CG14816 CG13806 CG5473 CG31000 CG32045 CG5568 CG5731 CG1034 CG2865 CG12723 CG31811 CG4673 CG11486 CG13900 CG10571 CG32169 CG1765 CG2641 CG18745 CG15532 CG12432 CG1126 CG9027 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain210 ± 124 of 4 1.60Up
Head127 ± 84 of 4 1.00None
Eye238 ± 34 of 4 1.79Up
Thoracicoabdominal ganglion132 ± 64 of 4 1.00None
Salivary gland182 ± 114 of 4 1.36Up
Crop116 ± 84 of 4 0.90None
Midgut92 ± 44 of 4 0.70None
Tubule120 ± 64 of 4 0.90Down
Hindgut107 ± 14 of 4 0.80None
Heart91 ± 64 of 4 0.68Down
Fat body113 ± 84 of 4 0.85None
Ovary226 ± 54 of 4 1.70Up
Testis96 ± 74 of 4 0.70None
Male accessory glands167 ± 144 of 4 1.30None
Virgin spermatheca132 ± 64 of 4 0.99None
Mated spermatheca123 ± 84 of 4 0.92None
Adult carcass137 ± 184 of 4 1.00None
Larval CNS235 ± 94 of 4 1.76Up
Larval Salivary gland279 ± 74 of 4 2.09Up
Larval midgut113 ± 94 of 4 0.85None
Larval tubule163 ± 34 of 4 1.20None
Larval hindgut140 ± 74 of 4 1.05None
Larval fat body147 ± 94 of 4 1.10None
Larval trachea100 ± 74 of 4 0.75None
Larval carcass136 ± 34 of 4 1.02None
S2 cells (growing)386 ± 194 of 4 2.89Up
Whole fly133 ± 134 of 4

Looking for FBgn0025674. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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