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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025676 through 18771 annotations produced 1 hits



CKII-alpha subunit interactor-3 (CkIIalpha-i3):

Annotation Number : CG3217
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025676
Gbrowse : chr3L:708652-710455 (-) // 100.0 //
Probeset : 1635343_a_at
Accessions : protein= NP_523875; /// NP_728542;, nucleotide= NM_079151; /// NM_167840;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electro
FlyMine data for FBgn0025676.
BioGrid reports that CG3217 interacts with CG32685 CG32428 CG32584 CG33113 CG3689 CG5303 CG5709 CG6416 CG6838 CG6856 CG6972 CG7285 CG7933 CG8116 CG9379 CG9784 .
VDRC has 2 RNAi stocks for FBgn0025676 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain222 54 of 4 3.00Up
Head87 24 of 4 1.20None
Eye114 64 of 4 1.55Up
Thoracicoabdominal ganglion180 24 of 4 2.40Up
Salivary gland104 154 of 4 1.41None
Crop85 34 of 4 1.20None
Midgut109 94 of 4 1.50None
Tubule40 44 of 4 0.50Down
Hindgut77 54 of 4 1.00None
Heart63 44 of 4 0.86None
Fat body52 14 of 4 0.71None
Ovary166 74 of 4 2.30Up
Testis86 24 of 4 1.20None
Male accessory glands81 64 of 4 1.10None
Virgin spermatheca68 64 of 4 0.93None
Mated spermatheca74 54 of 4 1.01None
Adult carcass53 84 of 4 0.70None
Larval CNS306 174 of 4 4.15Up
Larval Salivary gland36 64 of 4 0.49Down
Larval midgut47 74 of 4 0.65None
Larval tubule48 34 of 4 0.70None
Larval hindgut66 74 of 4 0.90None
Larval fat body39 74 of 4 0.50Down
Larval trachea112 234 of 4 1.52None
Larval carcass45 44 of 4 0.62None
S2 cells (growing)164 54 of 4 2.23Up
Whole fly73 114 of 4

Looking for FBgn0025676. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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