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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025682 through 18771 annotations produced 1 hits



supercoiling factor (scf):

Annotation Number : CG9148
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025682
Gbrowse : chr3L:1298617-1300384 (+) // 100.0 //
Probeset : 1636762_a_at
Accessions : protein= NP_477392; /// NP_477393; /// NP_995953;, nucleotide= NM_058044; /// NM_058045; /// NM_206231;
Pathway : by hyperactivation of X chromosome // inferred from mutant phenotype /// 0045941 // positive regulation of transcriptio
Interpro : 0005700 // polytene chromosome // inferred from direct assay
FlyMine data for FBgn0025682.
BDGP gene expression has embryonic in situ data for scf: 33 pix of staining in 18 body parts.
TRiP has 1 RNAi stocks for FBgn0025682 available for purchase.
VDRC has 3 RNAi stocks for FBgn0025682 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain443 104 of 4 1.80Up
Head372 144 of 4 1.50Up
Eye244 314 of 4 0.99None
Thoracicoabdominal ganglion543 134 of 4 2.20Up
Salivary gland111 24 of 4 0.45Down
Crop113 54 of 4 0.50Down
Midgut22 24 of 4 0.10Down
Tubule38 43 of 4 0.20Down
Hindgut74 34 of 4 0.30Down
Heart603 154 of 4 2.46Up
Fat body267 214 of 4 1.09None
Ovary196 134 of 4 0.80Down
Testis302 214 of 4 1.20None
Male accessory glands2708 984 of 411.00Up
Virgin spermatheca166 44 of 4 0.68Down
Mated spermatheca217 294 of 4 0.88None
Adult carcass219 64 of 4 0.90None
Larval CNS337 234 of 4 1.37Up
Larval Salivary gland379 314 of 4 1.54Up
Larval midgut62 54 of 4 0.25Down
Larval tubule208 114 of 4 0.80None
Larval hindgut133 104 of 4 0.54Down
Larval fat body1943 1414 of 4 7.90Up
Larval trachea88 44 of 4 0.36Down
Larval carcass270 144 of 4 1.10None
S2 cells (growing)2312 354 of 4 9.41Up
Whole fly245 134 of 4

Looking for FBgn0025682. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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