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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025683 through 18771 annotations produced 1 hits



(CG3164):

Annotation Number : CG3164
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025683
Gbrowse : chr2L:122614-130791 (-) // 100.0 //
Probeset : 1641004_a_at
Accessions : protein= NP_001033865; /// NP_608494; /// NP_722605; /// NP_995603;, nucleotide= NM_001038776; /// NM_134650; /// NM_164366; /// NM_205881;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0025683.
BDGP gene expression has embryonic in situ data for BEST:CK02656: 19 pix of staining in 5 body parts.
Homophila reports that CG3164 is a close match (7e-11) to human gene ABCB3;PSF2;RING11;TAP2 (NP_000535), a gene associated with Bare lymphocyte syndrome, type I, due to TAP2 deficiency, 604571 (3);Wegener-like granulomatosis (3).
VDRC has 3 RNAi stocks for FBgn0025683 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain412 84 of 4 0.40Down
Head2113 374 of 4 1.90Up
Eye1072 954 of 4 0.99None
Thoracicoabdominal ganglion472 244 of 4 0.40Down
Salivary gland1757 614 of 4 1.62Up
Crop4342 1894 of 4 4.00Up
Midgut2582 674 of 4 2.40Up
Tubule1208 284 of 4 1.10Up
Hindgut2413 994 of 4 2.20Up
Heart3606 1884 of 4 3.32Up
Fat body4036 3654 of 4 3.72Up
Ovary371 104 of 4 0.30Down
Testis132 34 of 4 0.10Down
Male accessory glands623 274 of 4 0.60Down
Virgin spermatheca2822 364 of 4 2.60Up
Mated spermatheca2915 884 of 4 2.69Up
Adult carcass3381 1004 of 4 3.10Up
Larval CNS502 604 of 4 0.46Down
Larval Salivary gland464 274 of 4 0.43Down
Larval midgut1583 334 of 4 1.46Up
Larval tubule1867 434 of 4 1.70Up
Larval hindgut741 444 of 4 0.68Down
Larval fat body1642 1614 of 4 1.50Up
Larval trachea1024 504 of 4 0.94None
Larval carcass983 444 of 4 0.91None
S2 cells (growing)1298 384 of 4 1.20Up
Whole fly1085 404 of 4

Looking for FBgn0025683. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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