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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025692 through 18771 annotations produced 1 hits



/// CG11201 (CG3814 /// TTLL3B):

Annotation Number : CG3814
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025692
Gbrowse : chr2R:8762662-8764471 (-) // 100.0 //
Probeset : 1640032_a_at
Accessions : protein= NP_609068; /// NP_610824; /// NP_725236;, nucleotide= NM_135224; /// NM_136980; /// NM_165955;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
Interpro : "0004835 // tubulin-tyrosine ligase activity // inferred from electronic annotation /// 0004972 // N-methyl-D-aspartate
FlyMine data for FBgn0025692.
BDGP gene expression has embryonic in situ data for BEST:CK02213: 9 pix of staining in 2 body parts.
BioGrid reports that CG3814 interacts with CG9091 .
TRiP has 2 RNAi stocks for FBgn0025692 available for purchase.
VDRC has 2 RNAi stocks for FBgn0025692 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 10 of 4 0.10Down
Head49 54 of 4 0.30Down
Eye168 134 of 4 0.91None
Thoracicoabdominal ganglion7 00 of 4 0.00Down
Salivary gland21 20 of 4 0.12Down
Crop14 20 of 4 0.10Down
Midgut2464 254 of 413.30Up
Tubule1027 634 of 4 5.60Up
Hindgut321 124 of 4 1.70Up
Heart9 22 of 4 0.05Down
Fat body31 123 of 4 0.17Down
Ovary7 02 of 4 0.00Down
Testis50 34 of 4 0.30Down
Male accessory glands107 131 of 4 0.60None
Virgin spermatheca40 41 of 4 0.22Down
Mated spermatheca38 60 of 4 0.21Down
Adult carcass19 20 of 4 0.10Down
Larval CNS6 20 of 4 0.04Down
Larval Salivary gland16 00 of 4 0.09Down
Larval midgut2683 1854 of 414.52Up
Larval tubule748 194 of 4 4.00Up
Larval hindgut387 254 of 4 2.09Up
Larval fat body13 30 of 4 0.10Down
Larval trachea9 32 of 4 0.05Down
Larval carcass14 20 of 4 0.08Down
S2 cells (growing)61 64 of 4 0.33Down
Whole fly184 334 of 4

Looking for FBgn0025692. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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