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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025700 through 18771 annotations produced 1 hits



(CG5885):

Annotation Number : CG5885
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025700
Gbrowse : chr2L:9917220-9918165 (-) // 100.0 //
Probeset : 1630929_at
Accessions : protein= NP_609321;, nucleotide= NM_135477;
Pathway : "0005784 // Sec61 translocon complex // inferred from sequence or structural similarity /// 0005784 // Sec61 translocon
Interpro : endoplasmic reticulum targeting // inferred from sequence or structural similarity /// 0005811 // lipid particle // inf
FlyMine data for FBgn0025700.
VDRC has 1 RNAi stocks for FBgn0025700 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain296 ± 74 of 4 0.50Down
Head666 ± 374 of 4 1.10None
Eye488 ± 324 of 4 0.79Down
Thoracicoabdominal ganglion407 ± 84 of 4 0.70Down
Salivary gland3105 ± 1944 of 4 5.01Up
Crop560 ± 64 of 4 0.90None
Midgut1279 ± 244 of 4 2.10Up
Tubule462 ± 564 of 4 0.70Down
Hindgut536 ± 84 of 4 0.90None
Heart821 ± 764 of 4 1.32None
Fat body1708 ± 3514 of 4 2.75Up
Ovary767 ± 224 of 4 1.20Up
Testis897 ± 144 of 4 1.40Up
Male accessory glands2278 ± 314 of 4 3.70Up
Virgin spermatheca1588 ± 334 of 4 2.56Up
Mated spermatheca1839 ± 1554 of 4 2.97Up
Adult carcass855 ± 564 of 4 1.40Up
Larval CNS733 ± 284 of 4 1.18Up
Larval Salivary gland4293 ± 2704 of 4 6.92Up
Larval midgut1264 ± 704 of 4 2.04Up
Larval tubule549 ± 134 of 4 0.90None
Larval hindgut1063 ± 694 of 4 1.71Up
Larval fat body1839 ± 2874 of 4 3.00Up
Larval trachea1166 ± 2854 of 4 1.88Up
Larval carcass1419 ± 1254 of 4 2.29Up
S2 cells (growing)1264 ± 194 of 4 2.04Up
Whole fly620 ± 284 of 4

Looking for FBgn0025700. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime