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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025709 through 18771 annotations produced 1 hits



(CG8083):

Annotation Number : CG8083
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025709
Gbrowse : chr2R:4966250-4969880 (+) // 100.0 //
Probeset : 1634991_at
Accessions : protein= NP_610446; /// NP_995781; /// NP_995782;, nucleotide= NM_136602; /// NM_206059; /// NM_206060;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0001882 // nucleoside binding // inferred from electronic annotation /// 0005415 // nucleoside:sodium symporter activity
FlyMine data for FBgn0025709.
BDGP gene expression has embryonic in situ data for BEST:CK00459: 20 pix of staining in 3 body parts.
VDRC has 3 RNAi stocks for FBgn0025709 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head7 30 of 4 0.10Down
Eye0 00 of 4 0.01Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland121 214 of 4 1.56None
Crop80 44 of 4 1.00None
Midgut1111 544 of 414.30Up
Tubule144 104 of 4 1.90Up
Hindgut60 34 of 4 0.80None
Heart1 00 of 4 0.01Down
Fat body2 00 of 4 0.03Down
Ovary1 00 of 4 0.00Down
Testis4 00 of 4 0.10Down
Male accessory glands8 31 of 4 0.10Down
Virgin spermatheca103 24 of 4 1.33None
Mated spermatheca77 34 of 4 1.00None
Adult carcass8 40 of 4 0.10Down
Larval CNS2 00 of 4 0.03Down
Larval Salivary gland117 174 of 4 1.50None
Larval midgut324 564 of 4 4.16Up
Larval tubule465 104 of 4 6.00Up
Larval hindgut65 54 of 4 0.84None
Larval fat body2 00 of 4 0.00Down
Larval trachea16 42 of 4 0.21Down
Larval carcass93 34 of 4 1.19None
S2 cells (growing)1 00 of 4 0.02Down
Whole fly78 154 of 4

Looking for FBgn0025709. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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