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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025720 through 18771 annotations produced 1 hits



Ate1 (Ate1):

Annotation Number : CG9204
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025720
Gbrowse : chr2R:16142466-16144886 (-) // 100.0 //
Probeset : 1625590_a_at
Accessions : protein= NP_477394; /// NP_725939; /// NP_725940;, nucleotide= NM_058046; /// NM_166379; /// NM_166380;
Interpro : 0004057 // arginyltransferase activity // inferred from electronic annotation /// 0004057 // arginyltransferase activity
FlyMine data for FBgn0025720.
VDRC has 3 RNAi stocks for FBgn0025720 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain266 104 of 4 1.40Up
Head176 104 of 4 0.90None
Eye223 84 of 4 1.16None
Thoracicoabdominal ganglion249 84 of 4 1.30Up
Salivary gland812 264 of 4 4.23Up
Crop126 54 of 4 0.70Down
Midgut154 64 of 4 0.80Down
Tubule310 84 of 4 1.60Up
Hindgut200 64 of 4 1.00None
Heart223 214 of 4 1.16None
Fat body318 644 of 4 1.66Up
Ovary266 164 of 4 1.40Up
Testis182 124 of 4 1.00None
Male accessory glands237 74 of 4 1.20Up
Virgin spermatheca206 104 of 4 1.08None
Mated spermatheca193 54 of 4 1.01None
Adult carcass243 124 of 4 1.30Up
Larval CNS196 174 of 4 1.02None
Larval Salivary gland205 134 of 4 1.07None
Larval midgut89 44 of 4 0.47Down
Larval tubule231 44 of 4 1.20Up
Larval hindgut155 64 of 4 0.81Down
Larval fat body59 114 of 4 0.30Down
Larval trachea209 164 of 4 1.09None
Larval carcass172 164 of 4 0.90None
S2 cells (growing)283 74 of 4 1.48Up
Whole fly192 104 of 4

Looking for FBgn0025720. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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