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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025724 through 18771 annotations produced 1 hits



beta'-coatomer protein (beta'Cop):

Annotation Number : CG6699
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025724
Gbrowse : chr2L:13378896-13382391 (+) // 100.0 //
Probeset : 1635871_at
Accessions : protein= NP_524836;, nucleotide= NM_080097;
Pathway : Golgi to ER // non-traceable author statement /// 0010883 // regulation of lipid storage // inferred from direct assay
Interpro : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic an
FlyMine data for FBgn0025724.
Homophila reports that CG6699 is a close match (2e-16) to human gene GNB3 (NP_002066), a gene associated with {Hypertension, essential, susceptibility to}, 145500 (3).
TRiP has 2 RNAi stocks for FBgn0025724 available for purchase.
VDRC has 1 RNAi stocks for FBgn0025724 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain218 44 of 4 0.80Down
Head305 104 of 4 1.10None
Eye280 24 of 4 1.01None
Thoracicoabdominal ganglion234 114 of 4 0.80Down
Salivary gland1908 804 of 4 6.86Up
Crop292 34 of 4 1.10Up
Midgut485 94 of 4 1.70Up
Tubule585 434 of 4 2.10Up
Hindgut344 84 of 4 1.20Up
Heart264 74 of 4 0.95None
Fat body460 344 of 4 1.65Up
Ovary315 54 of 4 1.10Up
Testis110 64 of 4 0.40Down
Male accessory glands1664 344 of 4 6.00Up
Virgin spermatheca495 94 of 4 1.78Up
Mated spermatheca566 404 of 4 2.03Up
Adult carcass303 114 of 4 1.10None
Larval CNS475 94 of 4 1.71Up
Larval Salivary gland3479 884 of 412.50Up
Larval midgut541 154 of 4 1.95Up
Larval tubule462 164 of 4 1.70Up
Larval hindgut630 194 of 4 2.26Up
Larval fat body382 424 of 4 1.40None
Larval trachea624 874 of 4 2.24Up
Larval carcass614 144 of 4 2.21Up
S2 cells (growing)1100 194 of 4 3.95Up
Whole fly278 24 of 4

Looking for FBgn0025724. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime