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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025739 through 18771 annotations produced 1 hits



Partner of Numb (pon):

Annotation Number : CG3346
Flybase ID : FBgn0025739
Gbrowse : chrX:4530362-4533145 (+) // 100.0 //
Probeset : 1628732_at
Accessions : protein= NP_525072;, nucleotide= NM_080333;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0045178
FlyMine data for FBgn0025739.
TRiP has 1 RNAi stocks for FBgn0025739 available for purchase.
VDRC has 2 RNAi stocks for FBgn0025739 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.20Down
Head8 12 of 4 0.30Down
Eye4 00 of 4 0.18Down
Thoracicoabdominal ganglion12 14 of 4 0.50Down
Salivary gland6 20 of 4 0.24Down
Crop11 12 of 4 0.40Down
Midgut10 01 of 4 0.40Down
Tubule4 00 of 4 0.20Down
Hindgut9 11 of 4 0.40Down
Heart3 00 of 4 0.12Down
Fat body8 30 of 4 0.31Down
Ovary102 74 of 4 3.90Up
Testis18 24 of 4 0.70None
Male accessory glands7 10 of 4 0.30Down
Virgin spermatheca4 11 of 4 0.19Down
Mated spermatheca5 00 of 4 0.19Down
Adult carcass12 32 of 4 0.50Down
Larval CNS399 424 of 415.37Up
Larval Salivary gland10 21 of 4 0.41Down
Larval midgut20 14 of 4 0.77None
Larval tubule6 11 of 4 0.30Down
Larval hindgut15 14 of 4 0.61Down
Larval fat body16 24 of 4 0.60Down
Larval trachea39 24 of 4 1.52Up
Larval carcass27 34 of 4 1.07None
S2 cells (growing)105 34 of 4 4.06Up
Whole fly26 24 of 4

Looking for FBgn0025739. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime