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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025743 through 18771 annotations produced 1 hits



mushroom bodies tiny (mbt):

Annotation Number : CG18582
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025743
Gbrowse : chrX:16504744-16508891 (+) // 100.0 //
Probeset : 1630341_at
Accessions : protein= NP_523375;, nucleotide= NM_078651;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005912 // adherens junction // inferred from dire
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0025743.
Homophila reports that CG18582 is a close match (2e-11) to human gene ACVRL1;ACVRLK1;ALK1;HHT2 (NP_001070869), a gene associated with Hereditary hemorrhagic telangiectasia-2, 600376 (3).
BioGrid reports that CG18582 interacts with CG5168 CG3314 CG3869 CG9924 CG6447 CG6478 CG3018 CG3629 CG7948 CG5568 CG5731 CG12530 CG12530 Dmel CG34407 .
TRiP has 3 RNAi stocks for FBgn0025743 available for purchase.
VDRC has 3 RNAi stocks for FBgn0025743 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain271 ± 104 of 4 1.70Up
Head124 ± 54 of 4 0.80Down
Eye238 ± 84 of 4 1.46Up
Thoracicoabdominal ganglion190 ± 64 of 4 1.20None
Salivary gland145 ± 94 of 4 0.89None
Crop120 ± 44 of 4 0.70Down
Midgut45 ± 34 of 4 0.30Down
Tubule56 ± 14 of 4 0.30Down
Hindgut97 ± 54 of 4 0.60Down
Heart78 ± 14 of 4 0.48Down
Fat body60 ± 134 of 4 0.37Down
Ovary476 ± 74 of 4 2.90Up
Testis47 ± 34 of 4 0.30Down
Male accessory glands96 ± 24 of 4 0.60Down
Virgin spermatheca53 ± 24 of 4 0.33Down
Mated spermatheca61 ± 64 of 4 0.37Down
Adult carcass71 ± 54 of 4 0.40Down
Larval CNS251 ± 294 of 4 1.54Up
Larval Salivary gland121 ± 44 of 4 0.74Down
Larval midgut62 ± 34 of 4 0.38Down
Larval tubule66 ± 34 of 4 0.40Down
Larval hindgut126 ± 24 of 4 0.78Down
Larval fat body43 ± 24 of 4 0.30Down
Larval trachea212 ± 34 of 4 1.30Up
Larval carcass129 ± 44 of 4 0.79Down
S2 cells (growing)135 ± 34 of 4 0.83None
Whole fly163 ± 104 of 4

Looking for FBgn0025743. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime