FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0025790 through 18771 annotations produced 2 hits

TBPH (TBPH):

Annotation Number : CG10327
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025790
Gbrowse : chr2R:19746588-19750104 (-) // 100.0 //
Probeset : 1638268_at
Accessions : protein= NP_001163280; /// NP_001163281; /// NP_477399; /// NP_477400; /// NP_599145; /// NP_726373;, nucleotide= NM_001169809; /// NM_001169810; /// NM_058051; /// NM_058052; /// NM_134318; /// NM_166628;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0025790.
BDGP gene expression has embryonic in situ data for TBPH: 24 pix of staining in 17 body parts.
Homophila reports that CG10327 is a close match (3e-94) to human gene ALS10;TARDBP;TDP43 (NP_031401), a gene associated with Amyotrophic lateral sclerosis 10, 612069 (3).
BioGrid reports that CG10327 interacts with CG5890 CG9025 CG9083 CG10327 CG10650 CG10961 CG11138 CG11154 CG11164 CG12645 CG1298 CG12992 CG13084 CG13114 CG13502 CG13992 CG15105 CG1637 CG16747 CG16892 CG17221 CG41099 CG1836 CG2174 CG2199 CG2962 CG2967 CG3052 CG3074 CG31973 CG32019 CG3510 CG3692 CG4303 CG4328 CG4799 CG4998 CG5214 CG5468 CG5642 CG5791 CG6159 CG6688 CG6910 CG6933 CG7111 CG7123 CG7660 CG8216 CG8580 CG8640 CG8745 CG8907 CG8947 CG9036 CG9092 CG9277 CG9745 CG9765 CG9936 CG15365 CG4897 CG6287 CG31762 CG6246 .
TRiP has 2 RNAi stocks for FBgn0025790 available for purchase.
VDRC has 3 RNAi stocks for FBgn0025790 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	90 ± 8	4 of 4	8.50	Up
Head	32 ± 3	4 of 4	3.10	Up
Eye	21 ± 1	4 of 4	2.03	Up
Thoracicoabdominal ganglion	58 ± 4	4 of 4	5.50	Up
Salivary gland	19 ± 2	2 of 4	1.84	Up
Crop	30 ± 2	4 of 4	2.90	Up
Midgut	10 ± 1	2 of 4	1.00	None
Tubule	16 ± 0	4 of 4	1.60	Up
Hindgut	19 ± 1	4 of 4	1.80	Up
Heart	13 ± 0	4 of 4	1.26	Up
Fat body	18 ± 5	4 of 4	1.77	None
Ovary	6 ± 0	3 of 4	0.60	Down
Testis	3 ± 1	2 of 4	0.30	Down
Male accessory glands	10 ± 1	4 of 4	1.00	None
Virgin spermatheca	45 ± 6	4 of 4	4.30	Up
Mated spermatheca	39 ± 4	4 of 4	3.68	Up
Adult carcass	10 ± 1	1 of 4	1.00	None
Larval CNS	90 ± 16	4 of 4	8.56	Up
Larval Salivary gland	19 ± 2	4 of 4	1.79	Up
Larval midgut	18 ± 1	4 of 4	1.70	Up
Larval tubule	29 ± 3	4 of 4	2.80	Up
Larval hindgut	20 ± 1	4 of 4	1.92	Up
Larval fat body	19 ± 2	4 of 4	1.80	Up
Larval trachea	13 ± 3	4 of 4	1.24	None
Larval carcass	18 ± 3	4 of 4	1.72	None
S2 cells (growing)	15 ± 2	4 of 4	1.47	None
Whole fly	10 ± 0	4 of 4

TBPH (TBPH):

Annotation Number : CG10327
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025790
Gbrowse : chr2R:19746851-19750104 (-) // 100.0 //
Probeset : 1635758_s_at
Accessions : protein= NP_001163280; /// NP_001163281; /// NP_477399; /// NP_477400; /// NP_599145; /// NP_726373;, nucleotide= NM_001169809; /// NM_001169810; /// NM_058051; /// NM_058052; /// NM_134318; /// NM_166628;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0025790.
BDGP gene expression has embryonic in situ data for TBPH: 24 pix of staining in 17 body parts.
Homophila reports that CG10327 is a close match (3e-94) to human gene ALS10;TARDBP;TDP43 (NP_031401), a gene associated with Amyotrophic lateral sclerosis 10, 612069 (3).
BioGrid reports that CG10327 interacts with CG5890 CG9025 CG9083 CG10327 CG10650 CG10961 CG11138 CG11154 CG11164 CG12645 CG1298 CG12992 CG13084 CG13114 CG13502 CG13992 CG15105 CG1637 CG16747 CG16892 CG17221 CG41099 CG1836 CG2174 CG2199 CG2962 CG2967 CG3052 CG3074 CG31973 CG32019 CG3510 CG3692 CG4303 CG4328 CG4799 CG4998 CG5214 CG5468 CG5642 CG5791 CG6159 CG6688 CG6910 CG6933 CG7111 CG7123 CG7660 CG8216 CG8580 CG8640 CG8745 CG8907 CG8947 CG9036 CG9092 CG9277 CG9745 CG9765 CG9936 CG15365 CG4897 CG6287 CG31762 CG6246 .
TRiP has 2 RNAi stocks for FBgn0025790 available for purchase.
VDRC has 3 RNAi stocks for FBgn0025790 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	289 ± 8	4 of 4	4.10	Up
Head	97 ± 7	4 of 4	1.40	Up
Eye	150 ± 10	4 of 4	2.11	Up
Thoracicoabdominal ganglion	240 ± 6	4 of 4	3.40	Up
Salivary gland	99 ± 10	4 of 4	1.40	None
Crop	103 ± 5	4 of 4	1.50	Up
Midgut	58 ± 3	4 of 4	0.80	None
Tubule	55 ± 1	4 of 4	0.80	Down
Hindgut	69 ± 3	4 of 4	1.00	None
Heart	54 ± 3	4 of 4	0.77	Down
Fat body	52 ± 3	4 of 4	0.73	Down
Ovary	107 ± 4	4 of 4	1.50	Up
Testis	132 ± 4	4 of 4	1.90	Up
Male accessory glands	92 ± 1	4 of 4	1.30	Up
Virgin spermatheca	100 ± 7	4 of 4	1.41	Up
Mated spermatheca	110 ± 8	4 of 4	1.55	Up
Adult carcass	51 ± 3	4 of 4	0.70	Down
Larval CNS	311 ± 28	4 of 4	4.39	Up
Larval Salivary gland	108 ± 2	4 of 4	1.53	Up
Larval midgut	67 ± 4	4 of 4	0.94	None
Larval tubule	92 ± 3	4 of 4	1.30	Up
Larval hindgut	86 ± 3	4 of 4	1.22	None
Larval fat body	70 ± 4	4 of 4	1.00	None
Larval trachea	77 ± 10	4 of 4	1.09	None
Larval carcass	74 ± 4	4 of 4	1.04	None
S2 cells (growing)	140 ± 5	4 of 4	1.97	Up
Whole fly	71 ± 5	4 of 4

Looking for FBgn0025790. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720