Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025800 through 18771 annotations produced 1 hits



chrX:8032423-8036274 (-) // 99.4 // (Smad on X):

Annotation Number : CG2262
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1629290_at
Accessions : protein= , nucleotide= NP_511079;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling
FlyMine data for full length.
Homophila reports that CG2262 is a close match (3e-18) to human gene SMAD7;MADH7;CRCS3 (NP_005895), a gene associated with {Colorectal cancer, susceptiblity to, 3}, 612229 (3).
BioGrid reports that CG2262 interacts with CG3052 CG4303 CG5920 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain114 44 of 4 2.20Up
Head96 74 of 4 1.90Up
Eye190 104 of 4 3.70Up
Thoracicoabdominal ganglion89 34 of 4 1.70Up
Salivary gland127 164 of 4 2.46Up
Crop145 64 of 4 2.80Up
Midgut94 54 of 4 1.80Up
Tubule435 144 of 4 8.40Up
Hindgut113 44 of 4 2.20Up
Heart214 64 of 4 4.15Up
Fat body183 314 of 4 3.55Up
Ovary81 34 of 4 1.60Up
Testis73 64 of 4 1.40Up
Male accessory glands69 54 of 4 1.30None
Virgin spermatheca678 364 of 413.15Up
Mated spermatheca589 264 of 411.42Up
Adult carcass75 94 of 4 1.50None
Larval CNS311 214 of 4 6.03Up
Larval Salivary gland104 54 of 4 2.02Up
Larval midgut173 94 of 4 3.35Up
Larval tubule131 54 of 4 2.50Up
Larval hindgut164 124 of 4 3.19Up
Larval fat body108 54 of 4 2.10Up
Larval trachea204 184 of 4 3.97Up
Larval carcass102 44 of 4 1.98Up
S2 cells (growing)98 44 of 4 1.90Up
Whole fly51 64 of 4

Looking for FBgn0025800. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime