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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025807 through 18771 annotations produced 1 hits



Rad9 (Rad9):

Annotation Number : CG3945
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025807
Gbrowse : chr3L:18863143-18865643 (-) // 100.0 //
Probeset : 1622899_at
Accessions : protein= NP_001097639; /// NP_649066;, nucleotide= NM_001104169; /// NM_140809;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0025807.
BDGP gene expression has embryonic in situ data for Rad9: 4 pix of staining in 1 body parts.
BioGrid reports that CG3945 interacts with CG4167 .
VDRC has 1 RNAi stocks for FBgn0025807 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 03 of 4 0.80None
Head7 02 of 4 0.80None
Eye11 14 of 4 1.46None
Thoracicoabdominal ganglion12 22 of 4 1.50None
Salivary gland8 21 of 4 1.08None
Crop9 11 of 4 1.20None
Midgut6 31 of 4 0.80None
Tubule12 13 of 4 1.50Up
Hindgut8 01 of 4 1.00None
Heart6 01 of 4 0.76None
Fat body7 23 of 4 0.92None
Ovary10 14 of 4 1.30None
Testis6 13 of 4 0.80None
Male accessory glands13 32 of 4 1.60None
Virgin spermatheca5 12 of 4 0.66None
Mated spermatheca9 12 of 4 1.09None
Adult carcass7 20 of 4 0.90None
Larval CNS11 04 of 4 1.35None
Larval Salivary gland13 12 of 4 1.66None
Larval midgut8 21 of 4 1.06None
Larval tubule12 23 of 4 1.50None
Larval hindgut10 13 of 4 1.30None
Larval fat body9 32 of 4 1.20None
Larval trachea14 43 of 4 1.73None
Larval carcass8 11 of 4 1.05None
S2 cells (growing)7 03 of 4 0.97None
Whole fly8 12 of 4

Looking for FBgn0025807. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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