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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025808 through 18771 annotations produced 1 hits



Rad17 (Rad17):

Annotation Number : CG7825
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025808
Gbrowse : chr3R:10486890-10488914 (-) // 100.0 //
Probeset : 1626520_at
Accessions : protein= NP_650382;, nucleotide= NM_142125;
Pathway : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0025808.
VDRC has 2 RNAi stocks for FBgn0025808 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 ± 04 of 4 0.50Down
Head19 ± 24 of 4 0.30Down
Eye21 ± 14 of 4 0.30Down
Thoracicoabdominal ganglion36 ± 24 of 4 0.50Down
Salivary gland42 ± 54 of 4 0.59Down
Crop22 ± 24 of 4 0.30Down
Midgut18 ± 24 of 4 0.30Down
Tubule28 ± 04 of 4 0.40Down
Hindgut19 ± 14 of 4 0.30Down
Heart13 ± 14 of 4 0.19Down
Fat body13 ± 11 of 4 0.19Down
Ovary168 ± 14 of 4 2.40Up
Testis32 ± 14 of 4 0.50Down
Male accessory glands40 ± 44 of 4 0.60Down
Virgin spermatheca14 ± 23 of 4 0.21Down
Mated spermatheca16 ± 13 of 4 0.23Down
Adult carcass22 ± 22 of 4 0.30Down
Larval CNS69 ± 44 of 4 0.97None
Larval Salivary gland30 ± 24 of 4 0.43Down
Larval midgut12 ± 03 of 4 0.17Down
Larval tubule32 ± 24 of 4 0.50Down
Larval hindgut17 ± 04 of 4 0.24Down
Larval fat body18 ± 33 of 4 0.30Down
Larval trachea18 ± 24 of 4 0.25Down
Larval carcass29 ± 04 of 4 0.42Down
S2 cells (growing)167 ± 14 of 4 2.34Up
Whole fly71 ± 34 of 4

Looking for FBgn0025808. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime