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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0025820 through 18771 annotations produced 1 hits

anon-fast-evolving-2G4 (JTBR):

Annotation Number : CG1935
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025820
Gbrowse : chr3L:1802005-1802835 (-) // 100.0 //
Probeset : 1632954_at
Accessions : protein= NP_477403;, nucleotide= NM_058055;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0025820.
BDGP gene expression has embryonic in situ data for JTBR: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0025820 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain135 34 of 4 1.10None
Head110 54 of 4 0.90None
Eye168 64 of 4 1.37Up
Thoracicoabdominal ganglion136 34 of 4 1.10Up
Salivary gland77 41 of 4 0.63Down
Crop158 74 of 4 1.30Up
Midgut123 74 of 4 1.00None
Tubule74 23 of 4 0.60Down
Hindgut160 104 of 4 1.30Up
Heart150 84 of 4 1.23Up
Fat body94 74 of 4 0.77Down
Ovary170 24 of 4 1.40Up
Testis85 44 of 4 0.70Down
Male accessory glands90 74 of 4 0.70Down
Virgin spermatheca72 24 of 4 0.59Down
Mated spermatheca97 64 of 4 0.79Down
Adult carcass108 74 of 4 0.90None
Larval CNS128 94 of 4 1.05None
Larval Salivary gland106 54 of 4 0.87Down
Larval midgut79 74 of 4 0.65Down
Larval tubule106 34 of 4 0.90Down
Larval hindgut114 54 of 4 0.93None
Larval fat body121 104 of 4 1.00None
Larval trachea221 94 of 4 1.81Up
Larval carcass113 44 of 4 0.93None
S2 cells (growing)151 34 of 4 1.23Up
Whole fly122 44 of 4

Looking for FBgn0025820. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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