Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025825 through 18771 annotations produced 1 hits



Hdac3 (Hdac3):

Annotation Number : CG2128
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025825
Gbrowse : chr3R:1298529-1300320 (-) // 100.0 //
Probeset : 1637369_at
Accessions : protein= NP_651978;, nucleotide= NM_143721;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay
Interpro : 0004407 // histone deacetylase activity // inferred from direct assay /// 0004407 // histone deacetylase activity // inf
FlyMine data for FBgn0025825.
BDGP gene expression has embryonic in situ data for HDAC3: 4 pix of staining in 1 body parts.
BioGrid reports that CG2128 interacts with CG8291 .
TRiP has 2 RNAi stocks for FBgn0025825 available for purchase.
VDRC has 3 RNAi stocks for FBgn0025825 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain158 14 of 4 1.10Up
Head109 44 of 4 0.70Down
Eye144 44 of 4 0.97None
Thoracicoabdominal ganglion159 54 of 4 1.10None
Salivary gland92 104 of 4 0.62Down
Crop146 84 of 4 1.00None
Midgut101 94 of 4 0.70Down
Tubule100 54 of 4 0.70Down
Hindgut106 84 of 4 0.70Down
Heart60 24 of 4 0.41Down
Fat body74 104 of 4 0.50Down
Ovary229 44 of 4 1.50Up
Testis81 64 of 4 0.50Down
Male accessory glands127 54 of 4 0.90Down
Virgin spermatheca64 24 of 4 0.44Down
Mated spermatheca60 34 of 4 0.41Down
Adult carcass90 44 of 4 0.60Down
Larval CNS363 184 of 4 2.44Up
Larval Salivary gland189 84 of 4 1.27Up
Larval midgut133 24 of 4 0.90Down
Larval tubule120 34 of 4 0.80Down
Larval hindgut161 14 of 4 1.08Up
Larval fat body94 14 of 4 0.60Down
Larval trachea193 214 of 4 1.30Up
Larval carcass140 64 of 4 0.95None
S2 cells (growing)258 64 of 4 1.74Up
Whole fly148 24 of 4

Looking for FBgn0025825. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime