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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025827 through 18771 annotations produced 1 hits



(CG6421):

Annotation Number : CG6421
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025827
Gbrowse : chr2R:12759754-12760413 (+) // 100.0 //
Probeset : 1636426_at
Accessions : protein= NP_652048;, nucleotide= NM_143791;
Interpro : 0003796 // lysozyme activity // inferred from electronic annotation
FlyMine data for FBgn0025827.
BDGP gene expression has embryonic in situ data for EG:EG0003.8: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0025827 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 11 of 4 0.10Down
Head986 ± 314 of 4 6.60Up
Eye1618 ± 554 of 410.78Up
Thoracicoabdominal ganglion10 ± 40 of 4 0.10Down
Salivary gland8 ± 30 of 4 0.06Down
Crop698 ± 414 of 4 4.70Up
Midgut3 ± 10 of 4 0.00Down
Tubule8 ± 30 of 4 0.10Down
Hindgut170 ± 94 of 4 1.10None
Heart36 ± 04 of 4 0.25Down
Fat body43 ± 114 of 4 0.29Down
Ovary1 ± 00 of 4 0.00Down
Testis4 ± 00 of 4 0.00Down
Male accessory glands9 ± 20 of 4 0.10Down
Virgin spermatheca65 ± 14 of 4 0.44Down
Mated spermatheca144 ± 204 of 4 0.97None
Adult carcass908 ± 324 of 4 6.10Up
Larval CNS3 ± 20 of 4 0.02Down
Larval Salivary gland2 ± 10 of 4 0.02Down
Larval midgut2 ± 00 of 4 0.01Down
Larval tubule5 ± 30 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.02Down
Larval fat body6 ± 20 of 4 0.00Down
Larval trachea27 ± 431 of 4 0.18Down
Larval carcass3 ± 10 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly150 ± 74 of 4

Looking for FBgn0025827. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime