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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025830 through 18771 annotations produced 1 hits



(CG5859):

Annotation Number : CG5859
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025830
Gbrowse : chr2R:12737962-12741606 (+) // 100.0 //
Probeset : 1638965_at
Accessions : protein= NP_611162;, nucleotide= NM_137318;
FlyMine data for FBgn0025830.
BioGrid reports that CG5859 interacts with CG6521 .
TRiP has 1 RNAi stocks for FBgn0025830 available for purchase.
VDRC has 3 RNAi stocks for FBgn0025830 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 14 of 4 0.80None
Head48 34 of 4 0.70Down
Eye44 14 of 4 0.67Down
Thoracicoabdominal ganglion36 14 of 4 0.50Down
Salivary gland79 54 of 4 1.19None
Crop62 24 of 4 0.90None
Midgut62 54 of 4 0.90None
Tubule81 24 of 4 1.20Up
Hindgut55 24 of 4 0.80None
Heart35 14 of 4 0.53Down
Fat body49 54 of 4 0.74Down
Ovary119 34 of 4 1.80Up
Testis30 14 of 4 0.50Down
Male accessory glands89 64 of 4 1.30Up
Virgin spermatheca44 24 of 4 0.67Down
Mated spermatheca55 14 of 4 0.83None
Adult carcass66 44 of 4 1.00None
Larval CNS113 44 of 4 1.69Up
Larval Salivary gland98 34 of 4 1.47Up
Larval midgut44 14 of 4 0.66Down
Larval tubule65 04 of 4 1.00None
Larval hindgut69 44 of 4 1.04None
Larval fat body36 24 of 4 0.50Down
Larval trachea68 84 of 4 1.02None
Larval carcass61 34 of 4 0.92None
S2 cells (growing)96 34 of 4 1.44Up
Whole fly67 54 of 4

Looking for FBgn0025830. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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