Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025832 through 18771 annotations produced 1 hits



Flap endonuclease 1 (Fen1):

Annotation Number : CG8648
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025832
Gbrowse : chr2R:12741481-12742843 (-) // 100.0 //
Probeset : 1624557_at
Accessions : protein= NP_523765;, nucleotide= NM_079041;
Pathway : 0005634 // nucleus // inferred by curator
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electro
FlyMine data for FBgn0025832.
Homophila reports that CG8648 is a close match (2e-15) to human gene COFS3;ERCC5;XPG (NP_000114), a gene associated with Cerebrooculofacioskeletal syndrome 3 (3);Xeroderma pigmentosum, group G, 278780 (3).
TRiP has 1 RNAi stocks for FBgn0025832 available for purchase.
VDRC has 3 RNAi stocks for FBgn0025832 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 ± 14 of 4 0.20Down
Head17 ± 13 of 4 0.20Down
Eye9 ± 11 of 4 0.09Down
Thoracicoabdominal ganglion28 ± 24 of 4 0.30Down
Salivary gland28 ± 01 of 4 0.29Down
Crop210 ± 74 of 4 2.10Up
Midgut19 ± 13 of 4 0.20Down
Tubule32 ± 54 of 4 0.30Down
Hindgut51 ± 34 of 4 0.50Down
Heart20 ± 23 of 4 0.21Down
Fat body17 ± 50 of 4 0.17Down
Ovary207 ± 94 of 4 2.10Up
Testis37 ± 34 of 4 0.40Down
Male accessory glands25 ± 41 of 4 0.30Down
Virgin spermatheca5 ± 00 of 4 0.05Down
Mated spermatheca15 ± 10 of 4 0.16Down
Adult carcass12 ± 30 of 4 0.10Down
Larval CNS129 ± 44 of 4 1.28None
Larval Salivary gland44 ± 44 of 4 0.44Down
Larval midgut15 ± 31 of 4 0.15Down
Larval tubule17 ± 13 of 4 0.20Down
Larval hindgut30 ± 24 of 4 0.31Down
Larval fat body19 ± 31 of 4 0.20Down
Larval trachea60 ± 174 of 4 0.60Down
Larval carcass27 ± 24 of 4 0.27Down
S2 cells (growing)82 ± 54 of 4 0.82None
Whole fly100 ± 114 of 4

Looking for FBgn0025832. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime