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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025835 through 18771 annotations produced 1 hits



(CG17707):

Annotation Number : CG17707
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025835
Gbrowse : chrX:39403-43719 (-) // 100.0 //
Probeset : 1637293_at
Accessions : protein= NP_001096857; /// NP_001162627;, nucleotide= NM_001103387; /// NM_001169156;
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0016747 // transferase activity
FlyMine data for FBgn0025835.
BioGrid reports that CG17707 interacts with CG6105 .
VDRC has 2 RNAi stocks for FBgn0025835 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 2.10None
Head5 ± 20 of 4 3.30None
Eye6 ± 10 of 4 4.26Up
Thoracicoabdominal ganglion4 ± 10 of 4 2.60None
Salivary gland15 ± 40 of 410.21Up
Crop5 ± 20 of 4 3.40None
Midgut3 ± 10 of 4 2.10None
Tubule4 ± 00 of 4 2.60Up
Hindgut4 ± 20 of 4 3.00None
Heart2 ± 10 of 4 1.52None
Fat body3 ± 30 of 4 2.39None
Ovary2 ± 10 of 4 1.50None
Testis2 ± 00 of 4 1.50None
Male accessory glands4 ± 10 of 4 3.10None
Virgin spermatheca6 ± 00 of 4 3.94Up
Mated spermatheca5 ± 10 of 4 3.23None
Adult carcass5 ± 10 of 4 3.20None
Larval CNS2 ± 20 of 4 1.50None
Larval Salivary gland5 ± 10 of 4 3.48None
Larval midgut3 ± 10 of 4 1.94None
Larval tubule3 ± 10 of 4 2.30None
Larval hindgut3 ± 10 of 4 2.37None
Larval fat body3 ± 10 of 4 2.00None
Larval trachea2 ± 10 of 4 1.73None
Larval carcass8 ± 20 of 4 5.65None
S2 cells (growing)1 ± 00 of 4 1.02None
Whole fly1 ± 00 of 4

Looking for FBgn0025835. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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