FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0025836 through 18771 annotations produced 3 hits

RhoGAP1A (RhoGAP1A):

Annotation Number : CG40453
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025836
Gbrowse : chrX:23868-31300 (+) // 100.0 //
Probeset : 1632255_s_at
Accessions : protein= NP_001096855; /// NP_001096856; /// NP_001162626;, nucleotide= NM_001103385; /// NM_001103386; /// NM_001169155;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005096 // GTPase a
FlyMine data for FBgn0025836.
BDGP gene expression has embryonic in situ data for RhoGAP1A: 13 pix of staining in 9 body parts.
TRiP has 1 RNAi stocks for FBgn0025836 available for purchase.
VDRC has 6 RNAi stocks for FBgn0025836 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	17 ± 0	4 of 4	0.90	None
Head	9 ± 2	2 of 4	0.40	Down
Eye	3 ± 1	0 of 4	0.16	Down
Thoracicoabdominal ganglion	9 ± 2	1 of 4	0.50	Down
Salivary gland	18 ± 4	0 of 4	0.90	None
Crop	31 ± 2	4 of 4	1.50	Up
Midgut	40 ± 3	4 of 4	2.00	Up
Tubule	27 ± 3	3 of 4	1.40	Up
Hindgut	20 ± 1	4 of 4	1.00	None
Heart	4 ± 0	0 of 4	0.20	Down
Fat body	11 ± 2	0 of 4	0.55	Down
Ovary	23 ± 2	4 of 4	1.20	None
Testis	5 ± 1	0 of 4	0.30	Down
Male accessory glands	8 ± 4	0 of 4	0.40	None
Virgin spermatheca	7 ± 1	0 of 4	0.39	Down
Mated spermatheca	7 ± 0	0 of 4	0.36	Down
Adult carcass	8 ± 1	0 of 4	0.40	Down
Larval CNS	8 ± 1	1 of 4	0.42	Down
Larval Salivary gland	11 ± 2	0 of 4	0.55	Down
Larval midgut	11 ± 1	3 of 4	0.58	Down
Larval tubule	33 ± 3	4 of 4	1.70	Up
Larval hindgut	13 ± 2	3 of 4	0.67	None
Larval fat body	21 ± 3	1 of 4	1.00	None
Larval trachea	2 ± 2	0 of 4	0.12	Down
Larval carcass	7 ± 1	0 of 4	0.36	Down
S2 cells (growing)	3 ± 1	0 of 4	0.18	Down
Whole fly	20 ± 2	4 of 4

Brother /// RhoGAP1A (Bro /// RhoGAP1A):

Annotation Number : CG7960
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013755
Gbrowse : chr3L:1647868-1648613 (+) // 100.0 //
Probeset : 1630889_at
Accessions : protein= NP_477066;, nucleotide= NM_057718;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator act
FlyMine data for FBgn0013755.
Homophila reports that CG7960 is a close match (4e-38) to human gene CBFB (NP_074036), a gene associated with Myeloid leukemia, acute, M4Eo subtype (3).
BioGrid reports that CG7960 interacts with CG1689 CG7959 .
TRiP has 1 RNAi stocks for FBgn0013755 available for purchase.
VDRC has 1 RNAi stocks for FBgn0013755 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	1.00	None
Head	1 ± 0	0 of 4	2.20	None
Eye	0 ± 0	0 of 4	1.33	None
Thoracicoabdominal ganglion	2 ± 0	0 of 4	4.00	None
Salivary gland	5 ± 3	0 of 4	10.38	None
Crop	1 ± 0	0 of 4	2.30	None
Midgut	1 ± 0	0 of 4	2.10	None
Tubule	0 ± 0	0 of 4	1.80	Up
Hindgut	0 ± 0	0 of 4	1.30	None
Heart	0 ± 0	0 of 4	1.52	None
Fat body	0 ± 0	0 of 4	1.33	None
Ovary	0 ± 0	0 of 4	1.00	None
Testis	5 ± 1	0 of 4	9.90	None
Male accessory glands	1 ± 0	0 of 4	2.50	None
Virgin spermatheca	0 ± 0	0 of 4	1.10	None
Mated spermatheca	0 ± 0	0 of 4	1.00	None
Adult carcass	2 ± 1	0 of 4	5.00	None
Larval CNS	5 ± 2	0 of 4	9.62	Up
Larval Salivary gland	1 ± 0	0 of 4	2.19	None
Larval midgut	1 ± 0	0 of 4	2.67	Up
Larval tubule	0 ± 0	0 of 4	1.60	None
Larval hindgut	0 ± 0	0 of 4	0.90	None
Larval fat body	1 ± 0	0 of 4	3.00	Up
Larval trachea	1 ± 1	0 of 4	3.76	None
Larval carcass	1 ± 0	0 of 4	2.67	None
S2 cells (growing)	0 ± 0	0 of 4	1.62	None
Whole fly	0 ± 0	0 of 4

RhoGAP1A (RhoGAP1A):

Annotation Number : CG17960
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025836
Gbrowse : chrX:34131-36730 (+) // 100.0 //
Probeset : 1628462_s_at
Accessions : protein= NP_001096855; /// NP_001096856; /// NP_001162626;, nucleotide= NM_001103385; /// NM_001103386; /// NM_001169155;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005096 // GTPase a
FlyMine data for FBgn0025836.
BDGP gene expression has embryonic in situ data for RhoGAP1A: 13 pix of staining in 9 body parts.
TRiP has 1 RNAi stocks for FBgn0025836 available for purchase.
VDRC has 6 RNAi stocks for FBgn0025836 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	313 ± 7	4 of 4	1.50	Up
Head	157 ± 5	4 of 4	0.80	Down
Eye	108 ± 4	4 of 4	0.53	Down
Thoracicoabdominal ganglion	319 ± 17	4 of 4	1.60	Up
Salivary gland	253 ± 10	4 of 4	1.24	Up
Crop	396 ± 3	4 of 4	1.90	Up
Midgut	665 ± 22	4 of 4	3.30	Up
Tubule	518 ± 9	4 of 4	2.50	Up
Hindgut	270 ± 8	4 of 4	1.30	Up
Heart	182 ± 7	4 of 4	0.90	None
Fat body	123 ± 10	4 of 4	0.60	Down
Ovary	432 ± 4	4 of 4	2.10	Up
Testis	29 ± 2	4 of 4	0.10	Down
Male accessory glands	161 ± 9	4 of 4	0.80	Down
Virgin spermatheca	145 ± 13	4 of 4	0.71	Down
Mated spermatheca	159 ± 7	4 of 4	0.78	Down
Adult carcass	136 ± 14	4 of 4	0.70	Down
Larval CNS	302 ± 21	4 of 4	1.48	Up
Larval Salivary gland	187 ± 7	4 of 4	0.92	None
Larval midgut	427 ± 19	4 of 4	2.09	Up
Larval tubule	431 ± 6	4 of 4	2.10	Up
Larval hindgut	301 ± 7	4 of 4	1.48	Up
Larval fat body	165 ± 13	4 of 4	0.80	None
Larval trachea	224 ± 13	4 of 4	1.10	None
Larval carcass	201 ± 11	4 of 4	0.99	None
S2 cells (growing)	2 ± 0	0 of 4	0.01	Down
Whole fly	204 ± 11	4 of 4

Looking for FBgn0025836. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720