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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025837 through 18771 annotations produced 1 hits



(CG17636):

Annotation Number : CG17636
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025837
Gbrowse : chrX:20850-23076 (-) // 100.0 //
Probeset : 1630612_at
Accessions : protein= NP_001096854;, nucleotide= NM_001103384;
Interpro : 0003840 // gamma-glutamyltransferase activity // inferred from electronic annotation /// 0003840 // gamma-glutamyltransf
FlyMine data for FBgn0025837.
VDRC has 2 RNAi stocks for FBgn0025837 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland6 ± 30 of 4 0.24Down
Crop2 ± 10 of 4 0.10Down
Midgut22 ± 43 of 4 0.90None
Tubule811 ± 1314 of 430.60Up
Hindgut53 ± 74 of 4 2.00Up
Heart2 ± 20 of 4 0.10Down
Fat body3 ± 10 of 4 0.11Down
Ovary0 ± 00 of 4 0.00Down
Testis68 ± 24 of 4 2.60Up
Male accessory glands4 ± 10 of 4 0.20Down
Virgin spermatheca6 ± 20 of 4 0.25Down
Mated spermatheca3 ± 10 of 4 0.12Down
Adult carcass5 ± 20 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.07Down
Larval Salivary gland3 ± 10 of 4 0.12Down
Larval midgut942 ± 444 of 435.51Up
Larval tubule578 ± 374 of 421.80Up
Larval hindgut6 ± 13 of 4 0.25Down
Larval fat body14 ± 71 of 4 0.50None
Larval trachea10 ± 181 of 4 0.41None
Larval carcass4 ± 10 of 4 0.18Down
S2 cells (growing)3 ± 00 of 4 0.12Down
Whole fly26 ± 34 of 4

Looking for FBgn0025837. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime