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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025838 through 18771 annotations produced 1 hits



(CG2652):

Annotation Number : CG2652
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025838
Gbrowse : chrX:2576019-2576965 (-) // 100.0 //
Probeset : 1631480_at
Accessions : protein= NP_570015;, nucleotide= NM_130659;
Pathway : DNA-dependent // inferred from electronic annotation"
Interpro : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0025838.
BDGP gene expression has embryonic in situ data for EG:155E2.5: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0025838 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head7 ± 30 of 4 0.10Down
Eye5 ± 10 of 4 0.10Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland5 ± 10 of 4 0.11Down
Crop2 ± 00 of 4 0.00Down
Midgut4 ± 20 of 4 0.10Down
Tubule15 ± 20 of 4 0.30Down
Hindgut3 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.03Down
Fat body5 ± 30 of 4 0.11Down
Ovary1 ± 00 of 4 0.00Down
Testis419 ± 164 of 4 8.30Up
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.05Down
Mated spermatheca3 ± 00 of 4 0.06Down
Adult carcass8 ± 20 of 4 0.20Down
Larval CNS1 ± 00 of 4 0.03Down
Larval Salivary gland4 ± 00 of 4 0.08Down
Larval midgut3 ± 00 of 4 0.07Down
Larval tubule10 ± 10 of 4 0.20Down
Larval hindgut2 ± 00 of 4 0.06Down
Larval fat body40 ± 162 of 4 0.80None
Larval trachea1 ± 00 of 4 0.03Down
Larval carcass7 ± 20 of 4 0.15Down
S2 cells (growing)2 ± 00 of 4 0.05Down
Whole fly50 ± 34 of 4

Looking for FBgn0025838. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime