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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025839 through 18771 annotations produced 1 hits



NADH ubiquinone oxidoreductase B14.5A (CG3621):

Annotation Number : CG3621
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025839
Gbrowse : chrX:2066559-2067173 (+) // 100.0 //
Probeset : 1641599_at
Accessions : protein= NP_569984;, nucleotide= NM_130628;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0042773 // ATP synthesis coupled electron tra
Interpro : 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory
FlyMine data for FBgn0025839.
BioGrid reports that CG3621 interacts with CG6779 CG7238 .
VDRC has 1 RNAi stocks for FBgn0025839 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain803 144 of 4 0.90None
Head1028 434 of 4 1.20Up
Eye1021 644 of 4 1.20None
Thoracicoabdominal ganglion1174 174 of 4 1.40Up
Salivary gland2100 674 of 4 2.47Up
Crop834 624 of 4 1.00None
Midgut1067 324 of 4 1.30Up
Tubule880 384 of 4 1.00None
Hindgut1118 214 of 4 1.30Up
Heart885 484 of 4 1.04None
Fat body665 124 of 4 0.78Down
Ovary405 144 of 4 0.50Down
Testis253 144 of 4 0.30Down
Male accessory glands659 464 of 4 0.80Down
Virgin spermatheca423 244 of 4 0.50Down
Mated spermatheca485 274 of 4 0.57Down
Adult carcass1736 1354 of 4 2.00Up
Larval CNS371 364 of 4 0.44Down
Larval Salivary gland717 264 of 4 0.84Down
Larval midgut1184 564 of 4 1.39Up
Larval tubule1074 1044 of 4 1.30None
Larval hindgut1078 284 of 4 1.27Up
Larval fat body301 194 of 4 0.40Down
Larval trachea356 294 of 4 0.42Down
Larval carcass910 934 of 4 1.07None
S2 cells (growing)268 54 of 4 0.32Down
Whole fly850 304 of 4

Looking for FBgn0025839. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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