FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0025839 through 18771 annotations produced 1 hits

NADH ubiquinone oxidoreductase B14.5A (CG3621):

Annotation Number : CG3621
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025839
Gbrowse : chrX:2066559-2067173 (+) // 100.0 //
Probeset : 1641599_at
Accessions : protein= NP_569984;, nucleotide= NM_130628;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0042773 // ATP synthesis coupled electron tra
Interpro : 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory
FlyMine data for FBgn0025839.
BioGrid reports that CG3621 interacts with CG6779 CG7238 .
VDRC has 1 RNAi stocks for FBgn0025839 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	803 ± 14	4 of 4	0.90	None
Head	1028 ± 43	4 of 4	1.20	Up
Eye	1021 ± 64	4 of 4	1.20	None
Thoracicoabdominal ganglion	1174 ± 17	4 of 4	1.40	Up
Salivary gland	2100 ± 67	4 of 4	2.47	Up
Crop	834 ± 62	4 of 4	1.00	None
Midgut	1067 ± 32	4 of 4	1.30	Up
Tubule	880 ± 38	4 of 4	1.00	None
Hindgut	1118 ± 21	4 of 4	1.30	Up
Heart	885 ± 48	4 of 4	1.04	None
Fat body	665 ± 12	4 of 4	0.78	Down
Ovary	405 ± 14	4 of 4	0.50	Down
Testis	253 ± 14	4 of 4	0.30	Down
Male accessory glands	659 ± 46	4 of 4	0.80	Down
Virgin spermatheca	423 ± 24	4 of 4	0.50	Down
Mated spermatheca	485 ± 27	4 of 4	0.57	Down
Adult carcass	1736 ± 135	4 of 4	2.00	Up
Larval CNS	371 ± 36	4 of 4	0.44	Down
Larval Salivary gland	717 ± 26	4 of 4	0.84	Down
Larval midgut	1184 ± 56	4 of 4	1.39	Up
Larval tubule	1074 ± 104	4 of 4	1.30	None
Larval hindgut	1078 ± 28	4 of 4	1.27	Up
Larval fat body	301 ± 19	4 of 4	0.40	Down
Larval trachea	356 ± 29	4 of 4	0.42	Down
Larval carcass	910 ± 93	4 of 4	1.07	None
S2 cells (growing)	268 ± 5	4 of 4	0.32	Down
Whole fly	850 ± 30	4 of 4

Looking for FBgn0025839. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720