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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025864 through 18771 annotations produced 1 hits



Calmodulin-binding protein related to a Rab3 GDP/GTP exchange protein (Crag):

Annotation Number : CG12737
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025864
Gbrowse : chrX:8486085-8495249 (+) // 100.0 //
Probeset : 1627612_a_at
Accessions : protein= NP_001162710; /// NP_525080; /// NP_727281;, nucleotide= NM_001169239; /// NM_080341; /// NM_167164;
Pathway : 0005938 // cell cortex // inferred from direct assay /// 0055037 // recycling endosome // inferred from direct assay
Interpro : 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005085 //
FlyMine data for FBgn0025864.
BDGP gene expression has embryonic in situ data for Crag: 4 pix of staining in 1 body parts.
Homophila reports that CG12737 is a close match (3e-27) to human gene CMT4B2;MTMR13;SBF2 (NP_112224), a gene associated with Charcot-Marie-Tooth disease, type 4B2, 604563 (3).
TRiP has 1 RNAi stocks for FBgn0025864 available for purchase.
VDRC has 2 RNAi stocks for FBgn0025864 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain141 54 of 4 0.90None
Head117 94 of 4 0.80Down
Eye86 34 of 4 0.55Down
Thoracicoabdominal ganglion150 84 of 4 1.00None
Salivary gland95 134 of 4 0.61Down
Crop277 94 of 4 1.80Up
Midgut283 74 of 4 1.80Up
Tubule94 64 of 4 0.60Down
Hindgut216 64 of 4 1.40Up
Heart141 134 of 4 0.91None
Fat body269 354 of 4 1.73Up
Ovary414 84 of 4 2.70Up
Testis30 14 of 4 0.20Down
Male accessory glands84 34 of 4 0.50Down
Virgin spermatheca118 104 of 4 0.76Down
Mated spermatheca170 134 of 4 1.10None
Adult carcass140 104 of 4 0.90None
Larval CNS172 314 of 4 1.11None
Larval Salivary gland123 104 of 4 0.79None
Larval midgut478 364 of 4 3.07Up
Larval tubule191 124 of 4 1.20None
Larval hindgut233 154 of 4 1.50Up
Larval fat body199 54 of 4 1.30Up
Larval trachea158 154 of 4 1.02None
Larval carcass178 64 of 4 1.14None
S2 cells (growing)242 44 of 4 1.55Up
Whole fly155 104 of 4

Looking for FBgn0025864. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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