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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025874 through 18771 annotations produced 1 hits



zinc-finger-motif-protein (Meics):

Annotation Number : CG8474
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025874
Gbrowse : chr3L:13955757-13957793 (-) // 99.79 //
Probeset : 1629709_at
Accessions : protein= NP_524062;, nucleotide= NM_079338;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding tran
FlyMine data for FBgn0025874.
Homophila reports that CG8474 is a close match (6e-11) to human gene HSAL4;SALL4 (NP_065169), a gene associated with Duane-radial ray syndrome, 607323 (3);IVIC syndrome, 147750 (3).
VDRC has 3 RNAi stocks for FBgn0025874 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 24 of 4 0.90None
Head30 04 of 4 0.50Down
Eye36 34 of 4 0.61Down
Thoracicoabdominal ganglion39 14 of 4 0.70Down
Salivary gland95 44 of 4 1.58Up
Crop44 24 of 4 0.70Down
Midgut31 14 of 4 0.50Down
Tubule35 04 of 4 0.60Down
Hindgut39 24 of 4 0.60Down
Heart25 44 of 4 0.42Down
Fat body23 44 of 4 0.39Down
Ovary160 54 of 4 2.60Up
Testis24 04 of 4 0.40Down
Male accessory glands51 24 of 4 0.90None
Virgin spermatheca29 24 of 4 0.48Down
Mated spermatheca29 24 of 4 0.49Down
Adult carcass25 22 of 4 0.40Down
Larval CNS56 34 of 4 0.93None
Larval Salivary gland64 84 of 4 1.06None
Larval midgut24 14 of 4 0.41Down
Larval tubule31 54 of 4 0.50Down
Larval hindgut35 14 of 4 0.58Down
Larval fat body41 74 of 4 0.70None
Larval trachea46 24 of 4 0.76Down
Larval carcass32 04 of 4 0.54Down
S2 cells (growing)76 34 of 4 1.26Up
Whole fly60 44 of 4

Looking for FBgn0025874. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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