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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026015 through 18771 annotations produced 2 hits



Topoisomerase 3 (Top3beta):

Annotation Number : CG32745
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026015 /// FBgn0052745
Gbrowse : chrX:6174265-6174785 (-) // 100.0 // /// chrX:6178366-6179692 (-) // 95.97 //
Probeset : 1634282_s_at
Accessions : protein= NP_511059;, nucleotide= NM_078504;
Pathway : endonucleolytic // inferred from direct assay /// 0006259 // DNA metabolic process // inferred from electronic annotati
Interpro : 0005694 // chromosome // inferred from electronic annotation
FlyMine data for FBgn0026015 /// FBgn0052745.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain115 44 of 4 2.00Up
Head56 24 of 4 1.00None
Eye51 34 of 4 0.90None
Thoracicoabdominal ganglion102 94 of 4 1.80Up
Salivary gland43 24 of 4 0.76None
Crop77 14 of 4 1.30Up
Midgut39 24 of 4 0.70None
Tubule22 13 of 4 0.40Down
Hindgut54 24 of 4 0.90None
Heart38 24 of 4 0.67Down
Fat body49 44 of 4 0.86None
Ovary107 24 of 4 1.90Up
Testis44 24 of 4 0.80None
Male accessory glands79 74 of 4 1.40None
Virgin spermatheca28 34 of 4 0.50Down
Mated spermatheca36 44 of 4 0.62Down
Adult carcass53 124 of 4 0.90None
Larval CNS67 24 of 4 1.17None
Larval Salivary gland80 14 of 4 1.39Up
Larval midgut42 44 of 4 0.73None
Larval tubule64 34 of 4 1.10None
Larval hindgut47 14 of 4 0.83None
Larval fat body85 144 of 4 1.50None
Larval trachea66 94 of 4 1.15None
Larval carcass65 74 of 4 1.13None
S2 cells (growing)100 74 of 4 1.74Up
Whole fly57 64 of 4



chrX:6178170-6181997 (-) // 100.0 // (Topoisomerase 3):

Annotation Number : CG3458
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1629218_at
Accessions : protein= , nucleotide= NP_511059;
Pathway : "0000737 // DNA catabolic process
Interpro : endonucleolytic // inferred from direct assay /// 0006259 // DNA metabolic process // inferred from electronic annotati
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 54 of 4 1.00None
Head35 34 of 4 0.60Down
Eye23 24 of 4 0.42Down
Thoracicoabdominal ganglion39 24 of 4 0.70Down
Salivary gland31 33 of 4 0.57Down
Crop48 44 of 4 0.90None
Midgut26 24 of 4 0.50Down
Tubule58 14 of 4 1.10Up
Hindgut31 34 of 4 0.60Down
Heart25 24 of 4 0.47Down
Fat body47 64 of 4 0.88None
Ovary111 64 of 4 2.00Up
Testis17 14 of 4 0.30Down
Male accessory glands42 14 of 4 0.80Down
Virgin spermatheca73 34 of 4 1.35Up
Mated spermatheca77 34 of 4 1.42Up
Adult carcass32 14 of 4 0.60Down
Larval CNS80 154 of 4 1.48Up
Larval Salivary gland44 44 of 4 0.82None
Larval midgut37 14 of 4 0.68Down
Larval tubule40 34 of 4 0.70Down
Larval hindgut61 24 of 4 1.13None
Larval fat body26 23 of 4 0.50Down
Larval trachea35 24 of 4 0.64Down
Larval carcass45 44 of 4 0.83None
S2 cells (growing)67 54 of 4 1.23None
Whole fly54 24 of 4

Looking for FBgn0026015. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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