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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0026058 through 18771 annotations produced 1 hits

Ods-site homeobox (OdsH):

Annotation Number : CG6352
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026058
Gbrowse : chrX:17685082-17708021 (+) // 100.0 //
Probeset : 1637849_at
Accessions : protein= NP_523389;, nucleotide= NM_078665;
Pathway : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // non-traceable author
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
FlyMine data for FBgn0026058.
Homophila reports that CG6352 is a close match (3e-11) to human gene KTCN;PPCD;PPD;RINX;VSX1 (NP_055403), a gene associated with Corneal dystrophy, hereditary polymorphous posterior, 122000 (3);Craniofacial anomalies, empty sella turcica, corneal endothelial changes, and abnormal retinal and auditory bipolar cells (3);Keratoconus, 148300 (3).
TRiP has 2 RNAi stocks for FBgn0026058 available for purchase.
VDRC has 3 RNAi stocks for FBgn0026058 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.60None
Head2 00 of 4 0.60None
Eye0 00 of 4 0.21None
Thoracicoabdominal ganglion10 40 of 4 2.80None
Salivary gland2 00 of 4 0.75None
Crop2 00 of 4 0.50None
Midgut2 00 of 4 0.80None
Tubule3 00 of 4 0.80None
Hindgut2 00 of 4 0.80None
Heart1 00 of 4 0.50None
Fat body4 10 of 4 1.09None
Ovary1 00 of 4 0.40None
Testis14 30 of 4 3.90Up
Male accessory glands5 10 of 4 1.50None
Virgin spermatheca12 30 of 4 3.30None
Mated spermatheca14 20 of 4 4.08Up
Adult carcass3 00 of 4 0.80None
Larval CNS2 00 of 4 0.66None
Larval Salivary gland2 00 of 4 0.66None
Larval midgut2 00 of 4 0.66None
Larval tubule1 00 of 4 0.30None
Larval hindgut2 00 of 4 0.54None
Larval fat body10 30 of 4 2.80None
Larval trachea0 00 of 4 0.23None
Larval carcass2 00 of 4 0.71None
S2 cells (growing)1 00 of 4 0.53None
Whole fly3 10 of 4

Looking for FBgn0026058. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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